# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fxlA 167 2.61e-03 1b7fA d.58.7.1 39183 d.58.7.1 39184 1sjyA 159 2.21e-01 d.113.1.1 -10908 1kgdA 180 2.73e-01 c.37.1.1 68582 1uqrA 154 3.57e-01 c.23.13.1 -6455 1bywA 110 6.30e-01 1bywA d.110.3.6 40912 1nwwA 149 7.23e-01 d.17.4.8 86306 1ojqA 212 7.29e-01 d.166.1.1 -11568 1h9mA 145 9.09e-01 1h9jA b.40.6.2 60833 b.40.6.2 60834 1h6tA 291 1.21e+00 b.1.18.15 65686 c.10.2.1 65687 1s96A 219 1.24e+00 c.37.1.1 -6972 1fm0E 150 1.43e+00 1fmaE d.41.5.1 38629 1hh1A 143 2.03e+00 1gefA c.52.1.18 61036 1jj2O 148 2.09e+00 1ffkM a.94.1.1 63100 1oa8A 133 2.20e+00 unknown_sccs -5142 1n3lA 372 2.26e+00 c.26.1.1 79966 1ekgA 127 2.40e+00 1dlxA d.82.2.1 40021 1jj2R 84 2.57e+00 1ffkP d.12.1.1 63103 1oeyA 83 2.64e+00 d.15.2.2 -9162 1s72P 149 3.13e+00 1s72S 85 3.42e+00 1g0sA 209 4.28e+00 1g0sA d.113.1.1 60187 1nsf 273 4.32e+00 1d2nA c.37.1.20 32429 1h9sA 140 5.03e+00 1b9mA b.40.6.2 60843 b.40.6.2 60844 1nh9A 87 5.20e+00 d.68.6.1 -10287 1dmmA 131 5.24e+00 1opy d.17.4.3 38114 1lci 550 5.33e+00 1lci e.23.1.1 43349 1opy 131 6.27e+00 1opy d.17.4.3 38113 1oh0A 131 6.35e+00 d.17.4.3 87004 1div 149 6.48e+00 1div d.99.1.1 40692 d.100.1.1 40693 1memA 215 6.69e+00 1cs8A d.3.1.1 37069 1ip9A 85 7.43e+00 1ip9A d.15.2.2 62638 1qq9A 284 7.75e+00 1xjo c.56.5.4 33841 1ri5A 298 7.77e+00 unknown_sccs -8063 1a0i 348 8.15e+00 1a0i b.40.4.6 25363 d.142.2.1 41577 1pyoA 167 8.42e+00 c.17.1.1 -7932 1juvA 193 8.61e+00 c.71.1.1 -8363 1o0wA 252 8.76e+00 a.149.1.1 80751 d.50.1.1 80752 1t0yA 122 8.82e+00 d.15.1.1 -9151 1i7qB 193 8.94e+00 1qdlB c.23.16.1 61902 1b9wA 89 9.54e+00 1b9wA g.3.11.4 44334 g.3.11.4 44335 1aba 87 9.55e+00 1aba c.47.1.1 32760 1dgfA 497 9.61e+00 1cf9A e.5.1.1 42782 1m7sA 484 9.67e+00 e.5.1.1 74574 1ugmA 125 9.70e+00 1l2mA 118 9.72e+00 d.89.1.4 77657 1rqpA 299 9.94e+00 unknown_sccs -4411 unknown_sccs -7908 1rhs 296 1.01e+01 1rhs c.46.1.2 32703 c.46.1.2 32704 1mpxA 615 1.08e+01 b.18.1.13 85041 c.69.1.21 85042 5ukdA 194 1.08e+01 1zin c.37.1.1 31851 1qwlA 505 1.10e+01 e.5.1.1 -11823 1jhsA 188 1.14e+01 d.107.1.1 84172 1i7dA 659 1.16e+01 1d6mA e.10.1.1 61886 1qf9A 194 1.17e+01 1zin c.37.1.1 31848 1jkgA 140 1.18e+01 d.17.4.2 66795 1qg8A 255 1.18e+01 1qg8A c.68.1.1 34505 1q3oA 109 1.19e+01 b.36.1.1 -3776 1vkmA 297 1.21e+01 1l8rA 101 1.25e+01 a.6.1.4 73700 1eq6A 189 1.29e+01 1eq6A d.107.1.1 40796 1ovaA 386 1.30e+01 1ovaA e.1.1.1 42619 1o5uA 101 1.30e+01 b.82.1.8 -4845 1tuhA 156 1.31e+01 1cbf 285 1.35e+01 1cbf c.90.1.1 35587 1xjo 284 1.35e+01 1xjo c.56.5.4 33843 1d4fA 431 1.35e+01 1b3rA c.2.1.4 30110 c.23.12.3 31370 1btn 106 1.36e+01 1btn b.55.1.1 26952 1oo0B 110 1.41e+01 d.58.7.1 87183 1q7hA 153 1.43e+01 b.122.1.1 -5124 unknown_sccs -9313 1ex7A 186 1.45e+01 1gky c.37.1.1 59537 1qhxA 178 1.50e+01 1qhsA c.37.1.3 31936 1lqtA 456 1.53e+01 c.3.1.1 74198 c.4.1.1 74199 1gefA 123 1.60e+01 1gefA c.52.1.18 60465 1oi2A 366 1.64e+01 c.32.1.2 87039 d.79.2.2 87040 1id1A 153 1.65e+01 1id1A c.2.1.9 62286 1on0A 158 1.65e+01 d.108.1.1 87095 1toaA 313 1.65e+01 1toaA c.92.2.2 35598 1g8fA 511 1.66e+01 1g8fA b.122.1.3 60348 c.26.1.5 60349 c.37.1.15 60350 1jvwA 167 1.67e+01 d.26.1.1 71907 1dbxA 158 1.69e+01 1dbuA d.116.1.1 40928 1b66A 140 1.69e+01 1b66A d.96.1.2 40657 1efvA 315 1.70e+01 1efvA c.26.2.3 31633 c.31.1.2 31728 1qy5A 269 1.76e+01 d.122.1.1 -10958 1bymA 97 1.77e+01 1bi0 b.34.1.2 24458 1rypA 243 1.78e+01 1pmaA d.153.1.4 41932 1r6xA 395 1.83e+01 b.122.1.3 -5125 c.26.1.5 -6620 1gtzA 156 1.84e+01 c.23.13.1 70539 1jkmB 361 1.84e+01 1jkmA c.69.1.2 34634 1gtdA 85 1.87e+01 d.58.45.1 76344 1a8y 367 1.90e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1brwA 433 1.91e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1t5eA 360 1.98e+01 1nfjA 89 2.02e+01 d.68.6.1 -10285 1kk1A 410 2.06e+01 b.43.3.1 72634 b.44.1.1 72635 c.37.1.8 72636 1je0A 236 2.11e+01 c.56.2.1 66581 1hv9A 456 2.12e+01 1fwyA b.81.1.4 28060 c.68.1.5 34518 1gky 187 2.14e+01 1gky c.37.1.1 31839 1eu3A 210 2.16e+01 1an8 b.40.2.2 25206 d.15.6.1 37795 1d0iA 156 2.16e+01 2dhqA c.23.13.1 31383 1qq7A 253 2.19e+01 1qq5A c.108.1.1 43329 1rypL 212 2.20e+01 d.153.1.4 41880 1e19A 314 2.20e+01 1b7bA c.73.1.1 34967 1a7cA 379 2.22e+01 1sek e.1.1.1 42660 1uu1A 335 2.23e+01 c.67.1.1 -8146 1b9mA 265 2.25e+01 1b9mA a.4.5.8 16118 b.40.6.2 58938 b.40.6.2 58939 1e3mA 800 2.32e+01 1ewqA a.113.1.1 19075 c.37.1.12 32389 c.55.6.1 33746 d.75.2.1 39747 1orvA 728 2.32e+01 b.70.3.1 87354 c.69.1.24 87355 1q8rA 120 2.34e+01 unknown_sccs -10422 1hleA 345 2.35e+01 1ovaA e.1.1.1 42618 1li4A 432 2.35e+01 c.2.1.4 84616 c.23.12.3 84617 1s4qA 228 2.36e+01 c.37.1.1 -6975 1ako 268 2.40e+01 1ako d.151.1.1 41779 1vjnA 220 2.44e+01 unknown_sccs -11458 1i1qB 192 2.50e+01 1qdlB c.23.16.1 61544 1ex2A 189 2.54e+01 1ex2A c.51.4.2 33225 1lhpA 312 2.54e+01 c.72.1.5 77960 1cc8A 73 2.57e+01 1cc8A d.58.17.1 39343 1ofcX 304 2.60e+01 a.4.1.3 -195 unknown_sccs -199 unknown_sccs -978 2apr 325 2.67e+01 2er7E b.50.1.2 26819 1f0cA 305 2.68e+01 1c8oA e.1.1.1 42676 1rk8A 165 2.71e+01 d.58.7.1 -10018 1q1oA 98 2.72e+01 d.15.2.2 -9172 1nmeA 146 2.74e+01 c.17.1.1 85874 1b74A 254 2.77e+01 1b74A c.78.2.1 35264 c.78.2.1 35265 1d2nA 272 2.78e+01 1d2nA c.37.1.20 32428 1r13A 148 2.81e+01 d.169.1.1 -11646 h.1.1.1 -12895 1eybA 471 2.82e+01 1ey2A b.82.1.4 28115 1rztA 331 2.84e+01 a.60.6.1 -1023 a.60.12.1 -1030 d.218.1.2 -9807 1k3bA 119 2.84e+01 b.61.5.1 72016 1fr3A 67 2.87e+01 1fr3A b.40.6.1 25436 1dt9A 437 2.99e+01 1dt9A c.55.4.2 33738 d.79.3.2 39815 d.91.1.1 40257 1lj5A 379 3.03e+01 e.1.1.1 73928 1musA 477 3.06e+01 c.55.3.4 79494 1ek0A 170 3.08e+01 1ctqA c.37.1.8 32076 3mag 307 3.13e+01 3mag c.66.1.25 34205 1qvbA 481 3.14e+01 1qvbA c.1.8.4 28983 1scfA 273 3.16e+01 1exzA a.26.1.2 16873 1cseI 71 3.18e+01 1egpA d.40.1.1 38559 1pg6A 243 3.19e+01 unknown_sccs -4997 1ev0A 58 3.19e+01 1ev0A d.71.1.1 39594 1kv0A 66 3.20e+01 g.3.7.1 -12437 1fzqA 181 3.21e+01 1hurA c.37.1.8 32060 1n6zA 105 3.23e+01 unknown_sccs 85369 1dyr 206 3.23e+01 1aoeA c.71.1.1 34916 1qq5A 253 3.24e+01 1qq5A c.108.1.1 43327 1n9lA 109 3.34e+01 d.110.3.6 85468 1ituA 369 3.35e+01 c.1.9.7 71423 1o94A 729 3.35e+01 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 1l1dA 152 3.37e+01 b.88.1.3 73452 1bxoA 323 3.39e+01 2er7E b.50.1.2 26805 1q42A 201 3.40e+01 d.17.4.2 -9292 1sjwA 144 3.43e+01 unknown_sccs -9296 1q7lA 198 3.44e+01 c.56.5.4 -7886 1j79A 347 3.48e+01 1j79A c.1.9.4 62675 1jyhA 157 3.51e+01 d.60.1.3 71956 1vpt 348 3.51e+01 3mag c.66.1.25 34207 1dcoA 104 3.53e+01 1dcpA d.74.1.1 39680 1im5A 180 3.56e+01 unknown_sccs 66211 1hkxA 147 3.58e+01 d.17.4.7 83567 1b16A 254 3.65e+01 1b16A c.2.1.2 29875 1fmtA 314 3.67e+01 1fmtA b.46.1.1 25758 c.65.1.1 34174 1kllA 130 3.67e+01 d.32.1.2 72720 1cq3A 233 3.69e+01 1cq3A b.27.1.1 23923 1dm0A 287 3.70e+01 1dm0A d.165.1.2 42227 1mtpA 323 3.71e+01 e.1.1.1 85107 1usmA 80 3.75e+01 d.74.1.1 -10334 1djnA 729 3.76e+01 2tmdA c.1.4.1 28612 c.3.1.1 30313 c.4.1.1 30598 3pyp 125 3.76e+01 3pyp d.110.3.1 40897 1r9hA 135 3.78e+01 d.26.1.1 -9482 1sbxA 106 3.82e+01 1e6yB 433 3.87e+01 1mroB a.89.1.1 18535 d.58.31.2 39453 1f7lA 121 3.87e+01 1f7lA d.150.1.2 59666 1k8wA 327 3.91e+01 b.122.1.1 83094 unknown_sccs -10143 1f08A 148 3.94e+01 1f08A d.89.1.2 59564