# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1dgyA	363	6.05e-01	1bx4A		
1liiA	363	6.08e-01		c.72.1.1	73921
1fxlA	167	4.66e+00	1b7fA	d.58.7.1	39183
				d.58.7.1	39184
1uqrA	154	4.84e+00		c.23.13.1	-6455
1kq3A	376	8.54e+00		e.22.1.2	68790
1f6bA	198	9.40e+00		c.37.1.8	64986
1fs7A	485	1.01e+01	1qdbA	a.138.1.3	19691
1rypA	243	1.34e+01	1pmaA	d.153.1.4	41932
1bywA	110	1.35e+01	1bywA	d.110.3.6	40912
1vicA	262	1.44e+01		c.68.1.13	-8252
1e4fT	419	1.98e+01	1e4fT	c.55.1.1	33453
				c.55.1.1	33454
1pbtA	244	2.18e+01		unknown_sccs	-6866
1vkmA	297	2.21e+01			
1lsuA	147	2.31e+01		c.2.1.9	74250
1fl1A	230	2.31e+01	1at3A	b.57.1.1	27023
3rabA	169	2.90e+01	1ctqA	c.37.1.8	32018
1j6wA	175	3.04e+01	1j98A	d.185.1.2	62663
1ir6A	424	3.12e+01		c.107.1.2	71342
1fm0E	150	3.14e+01	1fmaE	d.41.5.1	38629
1b5pA	385	3.32e+01		c.67.1.1	-8133
1l3iA	192	3.34e+01		c.66.1.22	77676
1id0A	152	3.50e+01		d.122.1.3	66111
1bjwA	382	3.61e+01	1bjwA	c.67.1.1	34349
1sjwA	144	3.78e+01		unknown_sccs	-9296
1o0wA	252	3.96e+01		a.149.1.1	80751
				d.50.1.1	80752