# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1fxlA	167	3.39e-01	1b7fA	d.58.7.1	39183
				d.58.7.1	39184
1uqrA	154	3.85e+00		c.23.13.1	-6455
1bywA	110	6.55e+00	1bywA	d.110.3.6	40912
1s72S	85	7.40e+00			
1jj2R	84	7.44e+00	1ffkP	d.12.1.1	63103
1fs7A	485	7.94e+00	1qdbA	a.138.1.3	19691
1iow	306	8.26e+00	1iow	c.30.1.2	31713
				d.142.1.1	41481
1sjyA	159	8.62e+00		d.113.1.1	-10908
1o0wA	252	9.96e+00		a.149.1.1	80751
				d.50.1.1	80752
1fm0E	150	1.06e+01	1fmaE	d.41.5.1	38629
1vicA	262	1.14e+01		c.68.1.13	-8252
1j6wA	175	1.17e+01	1j98A	d.185.1.2	62663
1ex2A	189	1.34e+01	1ex2A	c.51.4.2	33225
1dgyA	363	1.37e+01	1bx4A		
1liiA	363	1.37e+01		c.72.1.1	73921
1nmoA	247	1.40e+01		unknown_sccs	-8746
1d4fA	431	1.55e+01	1b3rA	c.2.1.4	30110
				c.23.12.3	31370
1yge	839	1.60e+01	1yge	a.119.1.1	19234
				b.12.1.1	23634
1kq3A	376	1.71e+01		e.22.1.2	68790
1lci	550	1.74e+01	1lci	e.23.1.1	43349
1kgdA	180	1.80e+01		c.37.1.1	68582
1rypD	241	1.83e+01	1rypD	d.153.1.4	41935
1h9mA	145	1.96e+01	1h9jA	b.40.6.2	60833
				b.40.6.2	60834
1eu8A	409	1.98e+01	1eu8A	c.94.1.1	59502
1k68A	140	2.14e+01		c.23.1.1	-6403
1gwiA	411	2.15e+01		a.104.1.1	76364
1f7lA	121	2.17e+01	1f7lA	d.150.1.2	59666
1nh9A	87	2.67e+01		d.68.6.1	-10287
1nwwA	149	2.76e+01		d.17.4.8	86306
1li4A	432	2.87e+01		c.2.1.4	84616
				c.23.12.3	84617
1qlmA	316	2.91e+01	1qlmA	d.147.1.1	41765
1jc9A	269	2.96e+01		d.171.1.1	66490
1dmmA	131	2.98e+01	1opy	d.17.4.3	38114
1opy	131	3.02e+01	1opy	d.17.4.3	38113
1p9qC	256	3.03e+01			
1fl1A	230	3.06e+01	1at3A	b.57.1.1	27023
1jvwA	167	3.11e+01		d.26.1.1	71907
1hyeA	313	3.23e+01	2cmd	c.2.1.5	61400
				d.162.1.1	61401
1l2mA	118	3.24e+01		d.89.1.4	77657
1vjnA	220	3.52e+01		unknown_sccs	-11458
1n3lA	372	3.72e+01		c.26.1.1	79966
1vi1A	345	3.80e+01		unknown_sccs	-8466
1jj2O	148	3.89e+01	1ffkM	a.94.1.1	63100
1h9sA	140	3.94e+01	1b9mA	b.40.6.2	60843
				b.40.6.2	60844