# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1sjyA	159	3.24e-01		d.113.1.1	-10908
3rabA	169	5.51e-01	1ctqA	c.37.1.8	32018
1fxlA	167	7.08e-01	1b7fA	d.58.7.1	39183
				d.58.7.1	39184
1vkmA	297	2.30e+00			
1uu1A	335	2.53e+00		c.67.1.1	-8146
1uqrA	154	2.62e+00		c.23.13.1	-6455
1pyoA	167	3.12e+00		c.17.1.1	-7932
1lhpA	312	4.64e+00		c.72.1.5	77960
1h9mA	145	5.22e+00	1h9jA	b.40.6.2	60833
				b.40.6.2	60834
1brwA	433	6.01e+00	1brwA	a.46.2.1	17764
				c.27.1.1	31628
				d.41.3.1	38626
1gmuA	143	7.02e+00		b.107.1.1	65335
				d.58.38.1	65336
1v93A	296	7.91e+00		c.1.23.1	-5654
1oqjA	97	8.57e+00		d.217.1.1	-9412
1pbtA	244	8.95e+00		unknown_sccs	-6866
1id0A	152	9.27e+00		d.122.1.3	66111
1kw4A	89	9.29e+00		a.60.1.2	73077
1rhs	296	1.13e+01	1rhs	c.46.1.2	32703
				c.46.1.2	32704
1nddA	76	1.14e+01	1ubi	d.15.1.1	37599
1iloA	77	1.20e+01		c.47.1.1	66205
1f3aA	222	1.23e+01	1pgtA	a.45.1.1	17701
				c.47.1.5	32995
2cbp	96	1.27e+01	2cbp	b.6.1.1	22895
1s72P	149	1.33e+01			
1i4wA	353	1.35e+01		c.66.1.24	66028
1n3lA	372	1.37e+01		c.26.1.1	79966
1g2yA	32	1.42e+01		unknown_sccs	17003
1ema	236	1.53e+01	1ema	d.22.1.1	38339
1jj2O	148	1.54e+01	1ffkM	a.94.1.1	63100
1pg6A	243	1.58e+01		unknown_sccs	-4997
1cseI	71	1.68e+01	1egpA	d.40.1.1	38559
1vioA	243	1.99e+01		unknown_sccs	-10154
				d.66.1.5	-10240
1kgdA	180	2.27e+01		c.37.1.1	68582
1bt0A	76	2.27e+01	1ubi	d.15.1.1	37607
1f6bA	198	2.34e+01		c.37.1.8	64986
1r29A	127	2.44e+01		d.42.1.1	-9726
1jx4A	352	2.49e+01		unknown_sccs	-10188
				unknown_sccs	-11898
1eqcA	394	2.76e+01	1cz1A	c.1.8.3	28811
1ek0A	170	2.77e+01	1ctqA	c.37.1.8	32076
1o0wA	252	2.81e+01		a.149.1.1	80751
				d.50.1.1	80752
1a6jA	163	3.00e+01	1a6jA	d.112.1.1	40915
1dgyA	363	3.01e+01	1bx4A		
1liiA	363	3.03e+01		c.72.1.1	73921
1l8rA	101	3.11e+01		a.6.1.4	73700
1fr3A	67	3.14e+01	1fr3A	b.40.6.1	25436
6rxn	46	3.38e+01	1rb9	g.41.5.1	45222
1f7lA	121	3.40e+01	1f7lA	d.150.1.2	59666
1nq7A	244	3.48e+01		a.123.1.1	-1682
1csh	435	3.52e+01	1csh	a.103.1.1	18880
1f94A	63	3.73e+01	1f94A	g.7.1.1	44435
1ni4A	365	3.82e+01		c.36.1.7	85728
1e6yC	247	3.84e+01	1mroC	d.58.31.1	39441
1h6uA	308	3.84e+01		b.1.18.15	65688
				c.10.2.1	65689
1k3yA	221	3.94e+01		a.45.1.1	77245
				c.47.1.5	77246
1c3cA	429	3.95e+01	1c3cA	a.127.1.1	19425