# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1fxlA	167	4.22e-01	1b7fA	d.58.7.1	39183
				d.58.7.1	39184
1dgyA	363	7.10e-01	1bx4A		
1liiA	363	7.10e-01		c.72.1.1	73921
1fs7A	485	2.40e+00	1qdbA	a.138.1.3	19691
1uqrA	154	5.48e+00		c.23.13.1	-6455
1vkmA	297	7.10e+00			
1ir6A	424	7.51e+00		c.107.1.2	71342
1uu1A	335	7.73e+00		c.67.1.1	-8146
1vicA	262	1.19e+01		c.68.1.13	-8252
1n3yA	198	1.23e+01		c.62.1.1	79976
1lsuA	147	1.65e+01		c.2.1.9	74250
1pyoA	167	1.77e+01		c.17.1.1	-7932
1hyeA	313	1.78e+01	2cmd	c.2.1.5	61400
				d.162.1.1	61401
1id0A	152	1.90e+01		d.122.1.3	66111
1f6bA	198	2.02e+01		c.37.1.8	64986
1o0wA	252	2.39e+01		a.149.1.1	80751
				d.50.1.1	80752
1kq3A	376	2.45e+01		e.22.1.2	68790
1rypA	243	2.57e+01	1pmaA	d.153.1.4	41932
1ugpA	203	2.70e+01			
1ireA	204	2.71e+01		d.149.1.1	76769
1b9wA	89	2.97e+01	1b9wA	g.3.11.4	44334
				g.3.11.4	44335
1id1A	153	3.03e+01	1id1A	c.2.1.9	62286
1gwiA	411	3.05e+01		a.104.1.1	76364
1nh9A	87	3.05e+01		d.68.6.1	-10287
1e4fT	419	3.21e+01	1e4fT	c.55.1.1	33453
				c.55.1.1	33454
1s72S	85	3.26e+01			
1jj2R	84	3.32e+01	1ffkP	d.12.1.1	63103
1sjwA	144	3.43e+01		unknown_sccs	-9296
1bjwA	382	3.50e+01	1bjwA	c.67.1.1	34349
1l3iA	192	3.68e+01		c.66.1.22	77676
1jwiA	131	3.78e+01		d.169.1.1	67383
1qxhA	167	3.83e+01		c.47.1.10	-7496
1fm0E	150	3.86e+01	1fmaE	d.41.5.1	38629