# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1fxlA	167	5.44e-01	1b7fA	d.58.7.1	39183
				d.58.7.1	39184
1dgyA	363	1.74e+00	1bx4A		
1liiA	363	1.74e+00		c.72.1.1	73921
1uu1A	335	2.34e+00		c.67.1.1	-8146
1uqrA	154	3.49e+00		c.23.13.1	-6455
1fs7A	485	3.74e+00	1qdbA	a.138.1.3	19691
1f6bA	198	4.55e+00		c.37.1.8	64986
1bjwA	382	5.45e+00	1bjwA	c.67.1.1	34349
1vicA	262	7.38e+00		c.68.1.13	-8252
1b5pA	385	8.26e+00		c.67.1.1	-8133
1e4fT	419	8.43e+00	1e4fT	c.55.1.1	33453
				c.55.1.1	33454
1n3yA	198	8.72e+00		c.62.1.1	79976
1vkmA	297	9.64e+00			
1o0wA	252	9.74e+00		a.149.1.1	80751
				d.50.1.1	80752
1kq3A	376	9.93e+00		e.22.1.2	68790
1pyoA	167	1.18e+01		c.17.1.1	-7932
1j6wA	175	1.22e+01	1j98A	d.185.1.2	62663
1fm0E	150	1.23e+01	1fmaE	d.41.5.1	38629
1b9wA	89	1.31e+01	1b9wA	g.3.11.4	44334
				g.3.11.4	44335
1lci	550	1.32e+01	1lci	e.23.1.1	43349
1f7lA	121	1.43e+01	1f7lA	d.150.1.2	59666
1bywA	110	1.46e+01	1bywA	d.110.3.6	40912
1nmoA	247	1.74e+01		unknown_sccs	-8746
1iow	306	1.79e+01	1iow	c.30.1.2	31713
				d.142.1.1	41481
1k68A	140	1.80e+01		c.23.1.1	-6403
1hyeA	313	2.04e+01	2cmd	c.2.1.5	61400
				d.162.1.1	61401
2sak	121	2.08e+01	2sak	d.15.5.1	37711
1kgdA	180	2.18e+01		c.37.1.1	68582
1sjwA	144	2.18e+01		unknown_sccs	-9296
1ex2A	189	2.28e+01	1ex2A	c.51.4.2	33225
1ir6A	424	2.30e+01		c.107.1.2	71342
1yge	839	2.31e+01	1yge	a.119.1.1	19234
				b.12.1.1	23634
1gwiA	411	2.31e+01		a.104.1.1	76364
1nslA	184	2.51e+01		d.108.1.1	86137
1nwwA	149	2.52e+01		d.17.4.8	86306
1rypA	243	2.68e+01	1pmaA	d.153.1.4	41932
1ojqA	212	2.85e+01		d.166.1.1	-11568
1gmuA	143	2.95e+01		b.107.1.1	65335
				d.58.38.1	65336
1s72S	85	3.02e+01			
1jj2R	84	3.05e+01	1ffkP	d.12.1.1	63103
1l2mA	118	3.13e+01		d.89.1.4	77657
1lsuA	147	3.30e+01		c.2.1.9	74250
1v9yA	167	3.43e+01			
1l3iA	192	3.46e+01		c.66.1.22	77676
1epuA	591	3.49e+01	1dn1A	e.25.1.1	43358
1vi1A	345	3.55e+01		unknown_sccs	-8466
1h9mA	145	3.64e+01	1h9jA	b.40.6.2	60833
				b.40.6.2	60834