# List of top-scoring protein chains for t04-100-30-bys hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1uu1A	335	8.06e-01		c.67.1.1	-8146
1b9wA	89	4.81e+00	1b9wA	g.3.11.4	44334
				g.3.11.4	44335
1gmuA	143	6.32e+00		b.107.1.1	65335
				d.58.38.1	65336
1n3yA	198	6.95e+00		c.62.1.1	79976
1fxlA	167	7.60e+00	1b7fA	d.58.7.1	39183
				d.58.7.1	39184
1izcA	339	8.32e+00		c.1.12.5	83838
1vkmA	297	8.85e+00			
1pyoA	167	1.30e+01		c.17.1.1	-7932
1bjwA	382	1.35e+01	1bjwA	c.67.1.1	34349
1fs7A	485	1.45e+01	1qdbA	a.138.1.3	19691
1gwiA	411	1.51e+01		a.104.1.1	76364
1rypA	243	1.76e+01	1pmaA	d.153.1.4	41932
1f7dA	136	1.78e+01	1dun	b.85.4.1	28353
1iw7C	1119	1.93e+01		e.29.1.1	71474
1kq3A	376	2.08e+01		e.22.1.2	68790
1b5pA	385	2.13e+01		c.67.1.1	-8133
1dgyA	363	2.14e+01	1bx4A		
1liiA	363	2.15e+01		c.72.1.1	73921
1g6aA	271	2.20e+01	1btl	e.3.1.1	42704
1gs5A	258	2.22e+01		c.73.1.2	70395
1jbkA	195	2.30e+01		c.37.1.20	71631
1id0A	152	2.37e+01		d.122.1.3	66111
1kgdA	180	2.55e+01		c.37.1.1	68582
1nmoA	247	2.58e+01		unknown_sccs	-8746
1rhs	296	2.94e+01	1rhs	c.46.1.2	32703
				c.46.1.2	32704
1g6hA	257	3.01e+01	1gajA	c.37.1.12	60318
1h9mA	145	3.13e+01	1h9jA	b.40.6.2	60833
				b.40.6.2	60834
1ir6A	424	3.13e+01		c.107.1.2	71342
1iyhA	198	3.28e+01		a.45.1.1	83790
				c.47.1.5	83791
1jwiA	131	3.40e+01		d.169.1.1	67383
1lci	550	3.51e+01	1lci	e.23.1.1	43349
1v5xA	203	3.58e+01		c.1.2.4	-5169
1vicA	262	3.60e+01		c.68.1.13	-8252
1bb9	115	3.65e+01	1bb9	b.34.2.1	24554
1lhpA	312	3.89e+01		c.72.1.5	77960
1ituA	369	3.89e+01		c.1.9.7	71423
1pd21	199	3.90e+01	1pd21		
1o0wA	252	3.94e+01		a.149.1.1	80751
				d.50.1.1	80752
1n57A	291	3.94e+01		c.23.16.2	85328