# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1sjyA	159	4.58e-01		d.113.1.1	-10908
1fxlA	167	9.13e-01	1b7fA	d.58.7.1	39183
				d.58.7.1	39184
1uqrA	154	1.73e+00		c.23.13.1	-6455
1q7lB	88	3.36e+00			
1lw6I	64	3.37e+00		d.40.1.1	74294
3rabA	169	3.40e+00	1ctqA	c.37.1.8	32018
1ypcI	64	3.66e+00	2sniI	d.40.1.1	38570
1b9wA	89	5.43e+00	1b9wA	g.3.11.4	44334
				g.3.11.4	44335
1cseI	71	7.46e+00	1egpA	d.40.1.1	38559
1f35A	162	9.30e+00	1f35A	b.94.1.1	59628
1in4A	334	1.03e+01	1hqcA	a.4.5.11	62597
				c.37.1.20	62598
1nlnA	204	1.05e+01		d.3.1.7	-8897
1avpA	204	1.38e+01	1avpA	d.3.1.7	37132
1hkxA	147	1.63e+01		d.17.4.7	83567
1dx5I	118	1.68e+01	1dx5I	g.3.11.1	44302
				g.3.11.1	44303
				g.3.11.1	44304
1k8rB	110	1.76e+01		d.15.1.5	72180
1ogwA	76	1.88e+01		d.15.1.1	87001
1in6A	334	1.89e+01	1hqcA	a.4.5.11	62601
				c.37.1.20	62602
1ubi	76	1.91e+01	1ubi	d.15.1.1	37584
1brwA	433	1.93e+01	1brwA	a.46.2.1	17764
				c.27.1.1	31628
				d.41.3.1	38626
1f7lA	121	2.09e+01	1f7lA	d.150.1.2	59666
1go3F	107	2.10e+01		a.60.8.2	65407
1r29A	127	2.27e+01		d.42.1.1	-9726
1kw4A	89	2.33e+01		a.60.1.2	73077
1n4wA	504	2.38e+01		c.3.1.2	-5991
				d.16.1.1	-9209
1nddA	76	2.39e+01	1ubi	d.15.1.1	37599
1f94A	63	2.40e+01	1f94A	g.7.1.1	44435
1k0rA	366	2.61e+01		b.40.4.5	67961
				d.52.3.1	67962
				d.52.3.1	67963
				d.202.1.1	67964
1jc4A	148	2.65e+01	1jc4A	d.32.1.4	62863
1q45A	391	2.67e+01		c.1.4.1	-5199
1mxtA	504	2.79e+01		c.3.1.2	79671
				d.16.1.1	79672
1ogdA	131	2.82e+01		unknown_sccs	-8007
1fts	295	2.95e+01	1ng1	a.24.13.1	16968
				c.37.1.10	32279
1lhpA	312	2.97e+01		c.72.1.5	77960
1ri9A	102	3.05e+01		b.34.2.1	-3579
1ckv	141	3.19e+01	1ckv	d.137.1.1	41452
2spcA	107	3.20e+01	2spcA	a.7.1.1	16311
1kxvC	121	3.25e+01		b.1.1.1	73190
1l8rA	101	3.43e+01		a.6.1.4	73700
1r1mA	164	3.51e+01		unknown_sccs	-10431
1uxy	340	3.60e+01	2mbr	d.145.1.2	41748
				d.146.1.1	41761
1pyoA	167	3.67e+01		c.17.1.1	-7932
1b4vA	504	3.69e+01	1b8sA	c.3.1.2	30334
				d.16.1.1	37865
1rhs	296	3.72e+01	1rhs	c.46.1.2	32703
				c.46.1.2	32704
1v93A	296	3.86e+01		c.1.23.1	-5654
1mrzA	293	3.87e+01		b.43.5.1	-4048
				c.26.1.3	-6616
1eeqA	114	3.99e+01	32c2A	b.1.1.1	20544