# List of top-scoring protein chains for T0241.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hx6A 394 8.27e-01 1cjdA b.121.2.1 58995 b.121.2.1 58996 1fzdA 201 9.49e-01 3fib d.171.1.1 42484 1s1dA 331 9.79e-01 unknown_sccs -4566 1cfzA 162 1.46e+00 1cfzA c.56.1.1 33754 1hcd 118 2.04e+00 1hce b.42.5.2 25624 1e49P 215 2.25e+00 2fua c.74.1.1 34981 1ky9A 448 2.96e+00 b.36.1.4 73198 b.47.1.1 73199 1q26A 277 4.90e+00 c.1.21.1 -5628 1dpe 507 6.32e+00 1dpe c.94.1.1 35799 1dppA 507 6.37e+00 1dpe c.94.1.1 35800 1iqaA 160 7.93e+00 b.22.1.1 71274 1jtzX 171 8.21e+00 b.22.1.1 63286 1gt1A 159 8.56e+00 b.60.1.1 -4436 1pboA 159 8.92e+00 1obpA b.60.1.1 27094 1g85A 159 8.97e+00 b.60.1.1 70159 1obpA 159 9.00e+00 1obpA b.60.1.1 27092 1azzA 226 9.26e+00 5ptp b.47.1.2 26072 1r2jA 366 9.95e+00 a.29.3.1 -748 e.6.1.1 -11864 1bssA 244 1.00e+01 1rvaA c.52.1.2 33256 1l6zA 216 1.02e+01 b.1.1.1 77770 b.1.1.4 77771 1jnrB 150 1.03e+01 d.58.1.5 66969 2aacA 177 1.07e+01 2arcA b.82.4.1 28150 1ivhA 394 1.11e+01 3mdeA a.29.3.1 16608 e.6.1.1 42869 1a8y 367 1.29e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1jli 112 1.44e+01 1jli a.26.1.2 16884 1hbnB 442 1.44e+01 1mroB a.89.1.1 60900 d.58.31.2 60901 1djqA 729 1.45e+01 2tmdA c.1.4.1 28614 c.3.1.1 30315 c.4.1.1 30600 1o94A 729 1.45e+01 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 2arcA 164 1.57e+01 2arcA b.82.4.1 28148 1meoA 209 1.57e+01 c.65.1.1 79035 1l1jA 239 1.71e+01 b.47.1.1 84516 1rynA 202 1.77e+01 c.56.3.1 -7860 1mejA 223 1.78e+01 c.65.1.1 79029 1dmlA 319 1.79e+01 1dmlA d.131.1.2 41380 d.131.1.2 41381 1qmyA 167 1.89e+01 1qmyA d.3.1.2 37094 1l1oC 181 1.93e+01 b.40.4.3 73480 2ara 149 1.97e+01 2arcA b.82.4.1 28152 1r0vA 305 1.98e+01 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 2achB 40 2.01e+01 1as4B 1c07A 95 2.05e+01 1eh2 a.39.1.6 17337 1e6vB 443 2.05e+01 1mroB a.89.1.1 18533 d.58.31.2 39451 1nzkA 143 2.19e+01 b.42.1.1 -3992 1gjyA 167 2.26e+01 a.39.1.8 70199 1fhjA 141 2.45e+01 a.1.1.2 59837 1ukmB 128 2.48e+01 d.169.1.1 -11625 1fviA 297 2.49e+01 1fviA b.40.4.6 25364 d.142.2.1 41578 1cfr 285 2.51e+01 1cfr c.52.1.7 33312 1qolA 173 2.56e+01 1qmyA d.3.1.2 37097 1p8lA 304 2.57e+01 b.40.4.6 -3951 d.142.2.1 -11247 1hqvA 191 2.64e+01 1hqvA a.39.1.8 61160 1oahA 519 2.69e+01 a.138.1.3 86736 1a3h 300 2.79e+01 7a3hA c.1.8.3 28819 1h5vA 304 2.79e+01 c.1.8.3 70898 7a3hA 303 2.80e+01 7a3hA c.1.8.3 28817 1qi2A 305 2.81e+01 7a3hA c.1.8.3 28824 1m56C 266 2.92e+01 f.25.1.1 74474 1g6iA 545 2.97e+01 a.102.2.1 83272 1dl2A 511 3.04e+01 1dl2A a.102.2.1 18844 1lf1A 308 3.08e+01 c.1.8.3 73877 1t2aA 375 3.09e+01 c.2.1.2 -5764 1bbhA 131 3.13e+01 1bbhA a.24.3.2 16546 1vkjA 285 3.19e+01 1fg9C 245 3.20e+01 1jrhI b.1.2.1 22060 b.1.2.1 22061 1iugA 352 3.23e+01 c.67.1.3 -8176 1f89A 291 3.41e+01 d.160.1.1 64988 1ffkW 73 3.42e+01 1ffkW g.41.8.1 45315 1mu5A 471 3.47e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1mx0A 472 3.49e+01 a.156.1.3 79618 d.14.1.3 79619 d.122.1.2 79620 1bdqA 99 3.58e+01 1fmb b.50.1.1 26686 1viuA 203 3.62e+01 d.113.1.1 -10889 1qmnA 401 3.66e+01 1ovaA e.1.1.1 42624 1fyhB 229 3.76e+01 1jrhI b.1.2.1 22055 b.1.2.1 22056 3caaB 37 3.78e+01 1as4B 1v5oA 102 3.90e+01 1ni4B 341 3.93e+01 c.36.1.7 85729 c.48.1.2 85730