# List of top-scoring protein chains for T0241.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s1dA 331 6.81e-01 unknown_sccs -4566 1hx6A 394 9.15e-01 1cjdA b.121.2.1 58995 b.121.2.1 58996 1e49P 215 1.36e+00 2fua c.74.1.1 34981 1q26A 277 1.55e+00 c.1.21.1 -5628 1jnrB 150 1.76e+00 d.58.1.5 66969 1cfzA 162 1.96e+00 1cfzA c.56.1.1 33754 1fzdA 201 2.25e+00 3fib d.171.1.1 42484 1hcd 118 3.02e+00 1hce b.42.5.2 25624 1ky9A 448 3.90e+00 b.36.1.4 73198 b.47.1.1 73199 1dppA 507 5.82e+00 1dpe c.94.1.1 35800 1dpe 507 5.83e+00 1dpe c.94.1.1 35799 1a8y 367 6.08e+00 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1ivhA 394 6.57e+00 3mdeA a.29.3.1 16608 e.6.1.1 42869 1azzA 226 6.84e+00 5ptp b.47.1.2 26072 2aacA 177 8.17e+00 2arcA b.82.4.1 28150 1r2jA 366 9.39e+00 a.29.3.1 -748 e.6.1.1 -11864 1djqA 729 9.63e+00 2tmdA c.1.4.1 28614 c.3.1.1 30315 c.4.1.1 30600 1o94A 729 9.64e+00 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 1gt1A 159 1.05e+01 b.60.1.1 -4436 1pboA 159 1.09e+01 1obpA b.60.1.1 27094 1g85A 159 1.11e+01 b.60.1.1 70159 1obpA 159 1.11e+01 1obpA b.60.1.1 27092 1v5tA 90 1.12e+01 1cfr 285 1.15e+01 1cfr c.52.1.7 33312 1fviA 297 1.22e+01 1fviA b.40.4.6 25364 d.142.2.1 41578 1jli 112 1.24e+01 1jli a.26.1.2 16884 1p8lA 304 1.25e+01 b.40.4.6 -3951 d.142.2.1 -11247 1l1jA 239 1.28e+01 b.47.1.1 84516 1dbhA 354 1.29e+01 1awe a.87.1.1 18514 b.55.1.1 26967 2arcA 164 1.29e+01 2arcA b.82.4.1 28148 1odfA 290 1.39e+01 c.37.1.6 -7045 1gxsA 270 1.50e+01 c.69.1.5 76375 1e6vB 443 1.54e+01 1mroB a.89.1.1 18533 d.58.31.2 39451 1bssA 244 1.63e+01 1rvaA c.52.1.2 33256 1dmlA 319 1.66e+01 1dmlA d.131.1.2 41380 d.131.1.2 41381 2ara 149 1.74e+01 2arcA b.82.4.1 28152 1osnA 341 1.83e+01 c.37.1.1 87387 1hbnB 442 1.84e+01 1mroB a.89.1.1 60900 d.58.31.2 60901 1meoA 209 1.86e+01 c.65.1.1 79035 1rynA 202 1.92e+01 c.56.3.1 -7860 1gjyA 167 1.94e+01 a.39.1.8 70199 1to6A 371 1.95e+01 1vkjA 285 1.95e+01 1viuA 203 2.02e+01 d.113.1.1 -10889 1f5iA 158 2.03e+01 b.80.5.1 -4788 1k4zA 159 2.03e+01 b.80.5.1 72070 2tsrA 307 2.10e+01 1bkpA d.117.1.1 41043 1mejA 223 2.11e+01 c.65.1.1 79029 1oahA 519 2.13e+01 a.138.1.3 86736 1iqaA 160 2.19e+01 b.22.1.1 71274 1jtzX 171 2.27e+01 b.22.1.1 63286 1l6zA 216 2.42e+01 b.1.1.1 77770 b.1.1.4 77771 1kq5A 159 2.43e+01 b.80.5.1 68795 1fg9C 245 2.50e+01 1jrhI b.1.2.1 22060 b.1.2.1 22061 1v5pA 126 2.56e+01 1mr7A 209 2.60e+01 b.81.1.3 -4798 1r0vA 305 2.64e+01 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1bbhA 131 2.73e+01 1bbhA a.24.3.2 16546 1lnlA 408 2.74e+01 a.86.1.1 84635 b.112.1.1 84636 1fyhB 229 3.08e+01 1jrhI b.1.2.1 22055 b.1.2.1 22056 2achB 40 3.11e+01 1as4B 1pbgA 468 3.14e+01 1e70M c.1.8.4 28946 1o54A 277 3.14e+01 c.66.1.13 -8095 1bc8C 93 3.18e+01 1awcA a.4.5.21 16168 2pbg 468 3.20e+01 1e70M c.1.8.4 28948 1ev7A 317 3.25e+01 1ev7B c.52.1.9 33315 1odkA 235 3.30e+01 c.56.2.1 86863 1m56C 266 3.35e+01 f.25.1.1 74474 1c07A 95 3.36e+01 1eh2 a.39.1.6 17337 1qwdA 177 3.40e+01 b.60.1.1 -4455 1fhjA 141 3.54e+01 a.1.1.2 59837 1ixh 321 3.62e+01 1ixh c.94.1.1 35761 1n0uA 842 3.64e+01 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1hefE 99 3.66e+01 1fmb b.50.1.1 26637 1ixi 321 3.67e+01 1ixh c.94.1.1 35771 1k8fA 157 3.67e+01 b.80.5.1 84344 1bdqA 99 3.97e+01 1fmb b.50.1.1 26686 1kooA 277 3.97e+01 c.10.2.3 68726 d.58.7.2 68727