# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1s1dA	331	1.90e+00		unknown_sccs	-4566
1yna	194	3.36e+00	1axkA	b.29.1.11	24335
1ohtA	215	6.32e+00		d.118.1.1	87036
1lci	550	8.62e+00	1lci	e.23.1.1	43349
1xypA	190	1.01e+01	1axkA	b.29.1.11	24327
1v2bA	177	1.16e+01			
1l9vA	317	1.33e+01		d.13.2.1	73760
				d.216.1.1	73761
1n9eA	787	1.34e+01		b.30.2.1	-3529
				d.17.2.1	-9278
				d.17.2.1	-9279
1amuA	563	1.36e+01	1amuA	e.23.1.1	43351
1pvxA	194	1.48e+01	1axkA	b.29.1.11	24341
1upiA	225	1.55e+01		b.82.1.1	-4823
1e9gA	286	1.61e+01	1wgjA	b.40.5.1	59393
2arcA	164	1.64e+01	2arcA	b.82.4.1	28148
1ii7A	333	1.69e+01	1ii7A	d.159.1.4	62415
1aly	146	1.71e+01	1aly	b.22.1.1	23856
2gar	212	1.83e+01	2gar	c.65.1.1	34161
1b7yB	785	1.84e+01	1pysB	a.6.1.1	16301
				a.6.1.1	16302
				b.40.4.4	25312
				d.58.13.1	39311
				d.104.1.1	40780
				d.138.1.1	41456
1b6rA	355	1.93e+01	1b6rA	b.84.2.1	28241
				c.30.1.1	31648
				d.142.1.2	41493
1h4gA	207	2.07e+01		b.29.1.11	70863
1bk1	184	2.23e+01	1axkA	b.29.1.11	24340
1qh7A	207	2.33e+01	1axkA	b.29.1.11	24317
1k6dA	220	2.40e+01		unknown_sccs	72082
1sefA	274	2.41e+01			
1meoA	209	2.48e+01		c.65.1.1	79035
1dfmA	223	2.62e+01	1d2iA	c.52.1.5	33295
1jl0A	334	2.66e+01	1jenA	d.156.1.1	63155
1ugmA	125	2.72e+01			
1i50K	120	2.75e+01		d.74.3.2	61765
1luzA	88	2.82e+01		b.40.4.5	74271
1dy9A	187	2.86e+01	1jxpA	b.47.1.3	26400
1iqaA	160	2.87e+01		b.22.1.1	71274
1i5pA	633	3.09e+01	1i5pA	b.18.1.3	61817
				b.77.2.1	61818
				f.1.3.1	61819
1p42A	270	3.11e+01		d.14.1.7	87754
				d.14.1.7	87755
1kzkA	99	3.15e+01		b.50.1.1	73371
1nh0A	99	3.20e+01		b.50.1.1	-4299
1dorA	311	3.20e+01	2dorA	c.1.4.1	28595
2dorA	311	3.44e+01	2dorA	c.1.4.1	28593
1mxmA	254	3.55e+01		b.38.1.3	79647
				d.58.43.1	79648
				f.34.1.1	79649
1uynX	308	3.61e+01		unknown_sccs	-12360
1mr7A	209	3.61e+01		b.81.1.3	-4798
1rwhA	757	3.72e+01		a.102.3.2	-1340
				b.24.1.1	-3300
				b.30.5.2	-3508
1jubA	311	3.76e+01		c.1.4.1	-5188
1mmiA	366	3.80e+01		d.131.1.1	-11093
				d.131.1.1	-11094
				d.131.1.1	-11095
1m3iA	471	3.90e+01		f.9.1.1	-12374
1iznA	286	3.97e+01		e.43.1.1	83847
1garA	212	3.99e+01	2gar	c.65.1.1	34162