# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s1dA 331 3.14e-01 unknown_sccs -4566 1yna 194 4.88e-01 1axkA b.29.1.11 24335 1h4gA 207 5.13e-01 b.29.1.11 70863 1qh7A 207 7.08e-01 1axkA b.29.1.11 24317 2arcA 164 1.17e+00 2arcA b.82.4.1 28148 1amuA 563 1.18e+00 1amuA e.23.1.1 43351 1mngA 203 1.19e+00 1avmA a.2.11.1 15776 d.44.1.1 38701 1vybA 238 1.46e+00 1lci 550 1.54e+00 1lci e.23.1.1 43349 1d5tA 433 1.97e+00 1gnd c.3.1.3 30422 d.16.1.6 37986 1xypA 190 2.13e+00 1axkA b.29.1.11 24327 1us8A 147 2.91e+00 c.37.1.12 -7194 1h1aA 191 3.14e+00 b.29.1.11 83450 1b8aA 438 4.02e+00 1b8aA b.40.4.1 25244 d.104.1.1 40765 1b6rA 355 4.04e+00 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1uch 230 4.24e+00 1uch d.3.1.6 37129 1kzkA 99 5.20e+00 b.50.1.1 73371 1n9eA 787 5.34e+00 b.30.2.1 -3529 d.17.2.1 -9278 d.17.2.1 -9279 1vjjA 692 5.78e+00 b.1.18.9 -2758 b.1.5.1 -2786 b.1.5.1 -2787 d.3.1.4 -8893 1smlA 269 5.82e+00 1smlA d.157.1.1 42053 1giqA 413 6.23e+00 d.166.1.1 76224 d.166.1.1 76225 1f8vA 355 6.30e+00 2bbvA b.121.4.4 23329 1suuA 312 6.59e+00 unknown_sccs -4610 1pvxA 194 6.92e+00 1axkA b.29.1.11 24341 1rypB 250 7.42e+00 1rypB d.153.1.4 41933 1s14A 194 7.57e+00 d.122.1.2 -10973 1bk1 184 7.81e+00 1axkA b.29.1.11 24340 1r4wA 226 7.94e+00 unknown_sccs -7447 1q15A 503 8.20e+00 c.26.2.1 -6625 d.153.1.1 -11400 1ugmA 125 8.35e+00 1iqaA 160 9.54e+00 b.22.1.1 71274 1skoA 143 9.76e+00 1ton 235 9.85e+00 5ptp b.47.1.2 26307 1ip9A 85 1.02e+01 1ip9A d.15.2.2 62638 1ud9A 245 1.04e+01 1difA 99 1.05e+01 1fmb b.50.1.1 26503 1xvaA 292 1.09e+01 1xvaA c.66.1.5 34183 2gar 212 1.23e+01 2gar c.65.1.1 34161 1nh0A 99 1.40e+01 b.50.1.1 -4299 1jb0D 138 1.46e+01 1jb0D d.187.1.1 62823 1f2tA 149 1.59e+01 1f2tA c.37.1.12 32373 1f5jA 199 1.66e+01 1axkA b.29.1.11 24342 1by2 119 1.71e+01 1by2 d.170.1.1 42452 1dv1A 449 1.78e+01 1bncA b.84.2.1 28234 c.30.1.1 31641 d.142.1.2 41486 1ltsA 185 1.81e+01 1lt3A d.166.1.1 42229 1nwwA 149 1.83e+01 d.17.4.8 86306 2bpa2 175 1.84e+01 2bpa2 1xyn 178 1.90e+01 1axkA b.29.1.11 24322 1g26A 31 1.96e+01 1g26A g.3.16.1 44381 1k6dA 220 1.98e+01 unknown_sccs 72082 1sftA 388 1.99e+01 1bd0A b.49.2.2 26482 c.1.6.1 28644 2nlrA 234 2.08e+01 2nlrA b.29.1.11 24344 1ig3A 263 2.19e+01 1ig3A b.82.6.1 62358 c.100.1.1 62359 1jj2S 119 2.20e+01 1ffkQ b.34.5.1 63104 1dazC 99 2.21e+01 1hvc b.50.1.1 26501 1s72T 120 2.21e+01 1bd0A 388 2.21e+01 1bd0A b.49.2.2 26480 c.1.6.1 28642 1unnC 115 2.29e+01 unknown_sccs -10216 1meoA 209 2.29e+01 c.65.1.1 79035 1h4rA 314 2.31e+01 a.11.2.1 65616 b.55.1.5 65617 d.15.1.4 65618 1nijA 318 2.34e+01 c.37.1.10 85741 d.237.1.1 85742 1oeyA 83 2.56e+01 d.15.2.2 -9162 1bkf 107 2.58e+01 1fkj d.26.1.1 38382 1jl0A 334 2.61e+01 1jenA d.156.1.1 63155 1l9vA 317 2.71e+01 d.13.2.1 73760 d.216.1.1 73761 1vjw 60 2.73e+01 1fxd d.58.1.4 38991 1garA 212 2.75e+01 2gar c.65.1.1 34162 1cr5A 189 2.76e+01 1cr5A b.52.2.3 26931 d.31.1.1 38465 1ka9H 200 2.82e+01 c.23.16.1 77308 1lt3A 240 2.85e+01 1lt3A d.166.1.1 42230 1aszB 490 2.91e+01 1b8aA b.40.4.1 25241 d.104.1.1 40762 1ex2A 189 3.05e+01 1ex2A c.51.4.2 33225 1rypD 241 3.08e+01 1rypD d.153.1.4 41935 1nzyA 269 3.09e+01 1nzyA c.14.1.3 30903 1q1uA 144 3.14e+01 b.42.1.1 -4006 1ghj 79 3.16e+01 1ghj b.84.1.1 28232 1s5pA 235 3.18e+01 c.31.1.5 -6774 1dpjA 329 3.24e+01 1smrA b.50.1.2 26828 1mbyA 88 3.25e+01 d.223.1.1 78931 1jpc 109 3.36e+01 1b2pA b.78.1.1 27986 1jkxA 212 3.48e+01 c.65.1.1 66813 1gsa 316 3.50e+01 1gsa c.30.1.3 31718 d.142.1.1 41477 1i5pA 633 3.54e+01 1i5pA b.18.1.3 61817 b.77.2.1 61818 f.1.3.1 61819 1kngA 156 3.61e+01 c.47.1.10 72777 1ijtA 128 3.72e+01 1bfg b.42.1.1 62510 1uxxX 133 3.75e+01 b.18.1.10 -3107 1j3wA 163 3.81e+01 unknown_sccs -10870 1mmiA 366 3.89e+01 d.131.1.1 -11093 d.131.1.1 -11094 d.131.1.1 -11095 1cczA 171 3.98e+01 1cczA b.1.1.1 19758 b.1.1.3 21683