# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hx6A 394 2.41e-01 1cjdA b.121.2.1 58995 b.121.2.1 58996 1bbhA 131 7.82e-01 1bbhA a.24.3.2 16546 1s1dA 331 9.12e-01 unknown_sccs -4566 1k4zA 159 1.05e+00 b.80.5.1 72070 1oeyA 83 1.27e+00 d.15.2.2 -9162 1rifA 282 1.75e+00 unknown_sccs -7265 1rypH 205 1.93e+00 d.153.1.4 41876 1f8yA 157 2.35e+00 1f8xA c.23.14.1 31395 1jj2R 84 4.57e+00 1ffkP d.12.1.1 63103 1s72S 85 4.62e+00 2gar 212 4.65e+00 2gar c.65.1.1 34161 1o94A 729 5.50e+00 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 1k99A 99 5.52e+00 a.21.1.1 68341 1djnA 729 5.58e+00 2tmdA c.1.4.1 28612 c.3.1.1 30313 c.4.1.1 30598 2tmdA 729 5.69e+00 2tmdA c.1.4.1 28616 c.3.1.1 30317 c.4.1.1 30602 1bjx 110 5.77e+00 1bjx c.47.1.2 32774 1ay7B 89 6.18e+00 1ay7B c.9.1.1 30836 1f6yA 262 6.35e+00 1f6yA c.1.21.2 29673 1qtnA 164 6.80e+00 1pauA c.17.1.1 30999 1thx 115 6.90e+00 1thx c.47.1.1 32732 1h4rA 314 7.24e+00 a.11.2.1 65616 b.55.1.5 65617 d.15.1.4 65618 1q1oA 98 8.98e+00 d.15.2.2 -9172 1ip9A 85 9.73e+00 1ip9A d.15.2.2 62638 1meoA 209 1.25e+01 c.65.1.1 79035 1n0uA 842 1.30e+01 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1us8A 147 1.30e+01 c.37.1.12 -7194 1s72P 149 1.33e+01 1jhgA 101 1.40e+01 1jhgA a.4.12.1 19009 1jj2O 148 1.48e+01 1ffkM a.94.1.1 63100 1hcd 118 1.55e+01 1hce b.42.5.2 25624 1garA 212 1.66e+01 2gar c.65.1.1 34162 1jkxA 212 1.68e+01 c.65.1.1 66813 1o66A 275 1.69e+01 c.1.12.8 -5590 1m3uA 264 1.71e+01 c.1.12.8 84784 1hufA 140 1.83e+01 1hufA d.195.1.1 61272 1qqrA 138 1.86e+01 1bmlC d.15.5.1 37721 1zin 217 1.87e+01 1zin c.37.1.1 31915 g.41.2.1 45178 1j9bA 141 1.95e+01 c.47.1.12 66459 1j3wA 163 2.01e+01 unknown_sccs -10870 1q8iA 783 2.06e+01 c.55.3.5 -7635 e.8.1.1 -11885 1hf2A 210 2.09e+01 1hf2A b.80.3.1 60992 c.102.1.1 60993 1amuA 563 2.09e+01 1amuA e.23.1.1 43351 1uocA 289 2.12e+01 unknown_sccs -7671 1a8y 367 2.26e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1oj6A 151 2.28e+01 a.1.1.2 -85 1auoA 218 2.31e+01 1auoA c.69.1.14 34716 1puzA 82 2.53e+01 1f5mA 180 2.54e+01 1f5mB d.110.2.1 40895 1gy7A 125 2.56e+01 d.17.4.2 70738 6ldh 330 2.56e+01 3ldh c.2.1.5 30161 d.162.1.1 42128 1evsA 187 2.58e+01 1evsA a.26.1.1 16845 1itcA 516 2.58e+01 b.3.1.1 83705 c.1.8.1 83706 1mngA 203 2.60e+01 1avmA a.2.11.1 15776 d.44.1.1 38701 1qg8A 255 2.79e+01 1qg8A c.68.1.1 34505 3daaA 277 2.82e+01 1daaA e.17.1.1 43272 1h05A 146 2.89e+01 c.23.13.1 76433 1ukmB 128 2.96e+01 d.169.1.1 -11625 1dbhA 354 3.02e+01 1awe a.87.1.1 18514 b.55.1.1 26967 1s6tA 285 3.18e+01 c.37.1.5 -7040 1vkjA 285 3.18e+01 1nijA 318 3.24e+01 c.37.1.10 85741 d.237.1.1 85742 1a79A 171 3.26e+01 1a79A c.52.2.1 33340 d.75.1.1 39739 1sv6A 269 3.32e+01 1gk9B 557 3.34e+01 1vdwA 254 3.35e+01 e.7.1.1 -11868 8acn 754 3.37e+01 1amj c.8.2.1 30724 c.83.1.1 35400 1cfr 285 3.37e+01 1cfr c.52.1.7 33312 1gpmA 525 3.45e+01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1jj2F 119 3.49e+01 1ffkE d.79.3.1 63091 2dhqA 146 3.49e+01 2dhqA c.23.13.1 31382 1q1fA 151 3.50e+01 1knvA 293 3.56e+01 c.52.1.7 68707 1cr5A 189 3.62e+01 1cr5A b.52.2.3 26931 d.31.1.1 38465 1np6A 174 3.63e+01 c.37.1.10 85954 1nmeA 146 3.68e+01 c.17.1.1 85874 1f8rA 498 3.80e+01 1f8rA c.3.1.2 30410 d.16.1.5 37974 1okiA 210 3.82e+01 b.11.1.1 -3030 b.11.1.1 -3031 1qv1A 195 3.88e+01 a.39.1.5 -830 1pq1A 196 3.88e+01 f.1.4.1 -12055 2bb2 181 3.89e+01 2bb2 b.11.1.1 23604 b.11.1.1 23605 1o6zA 303 3.93e+01 c.2.1.5 81107 d.162.1.1 81108 1ukgA 252 3.99e+01 b.29.1.1 -3390