# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1s1dA	331	6.12e-01		unknown_sccs	-4566
1lci	550	3.91e+00	1lci	e.23.1.1	43349
1l9vA	317	4.96e+00		d.13.2.1	73760
				d.216.1.1	73761
1k6dA	220	5.34e+00		unknown_sccs	72082
1amuA	563	6.75e+00	1amuA	e.23.1.1	43351
2arcA	164	6.88e+00	2arcA	b.82.4.1	28148
1jubA	311	7.05e+00		c.1.4.1	-5188
1ej6B	1275	7.31e+00		i.7.1.1	45968
1iqaA	160	7.72e+00		b.22.1.1	71274
1n9eA	787	8.23e+00		b.30.2.1	-3529
				d.17.2.1	-9278
				d.17.2.1	-9279
2dorA	311	8.43e+00	2dorA	c.1.4.1	28593
1dorA	311	8.53e+00	2dorA	c.1.4.1	28595
1yna	194	9.83e+00	1axkA	b.29.1.11	24335
1b6rA	355	1.01e+01	1b6rA	b.84.2.1	28241
				c.30.1.1	31648
				d.142.1.2	41493
1ugmA	125	1.01e+01			
1kzkA	99	1.18e+01		b.50.1.1	73371
2gar	212	1.19e+01	2gar	c.65.1.1	34161
1ii7A	333	1.22e+01	1ii7A	d.159.1.4	62415
1h4gA	207	1.23e+01		b.29.1.11	70863
1ka9H	200	1.27e+01		c.23.16.1	77308
1s5pA	235	1.29e+01		c.31.1.5	-6774
1xypA	190	1.37e+01	1axkA	b.29.1.11	24327
1b7yB	785	1.43e+01	1pysB	a.6.1.1	16301
				a.6.1.1	16302
				b.40.4.4	25312
				d.58.13.1	39311
				d.104.1.1	40780
				d.138.1.1	41456
1mngA	203	1.62e+01	1avmA	a.2.11.1	15776
				d.44.1.1	38701
1qh7A	207	1.73e+01	1axkA	b.29.1.11	24317
1gefA	123	1.89e+01	1gefA	c.52.1.18	60465
1meoA	209	1.93e+01		c.65.1.1	79035
1nh0A	99	1.95e+01		b.50.1.1	-4299
1dy9A	187	2.01e+01	1jxpA	b.47.1.3	26400
1difA	99	2.09e+01	1fmb	b.50.1.1	26503
1dfmA	223	2.11e+01	1d2iA	c.52.1.5	33295
1pmy	123	2.22e+01	1bqk	b.6.1.1	22888
1jl0A	334	2.26e+01	1jenA	d.156.1.1	63155
1uch	230	2.32e+01	1uch	d.3.1.6	37129
1pfo	500	2.32e+01	1pfo	f.9.1.1	43826
1pvxA	194	2.38e+01	1axkA	b.29.1.11	24341
1qy5A	269	2.44e+01		d.122.1.1	-10958
1i50K	120	2.54e+01		d.74.3.2	61765
1viuA	203	2.59e+01		d.113.1.1	-10889
1ukfA	188	2.72e+01		unknown_sccs	-8886
1jpc	109	2.87e+01	1b2pA	b.78.1.1	27986
1suuA	312	2.87e+01		unknown_sccs	-4610
1ohtA	215	2.92e+01		d.118.1.1	87036
1p42A	270	2.92e+01		d.14.1.7	87754
				d.14.1.7	87755
1ko3A	230	2.94e+01		d.157.1.1	-11454
1cr5A	189	2.96e+01	1cr5A	b.52.2.3	26931
				d.31.1.1	38465
1b04A	318	3.00e+01	1b04A	d.142.2.2	41579
1qorA	327	3.02e+01	1qorA	b.35.1.2	24766
				c.2.1.1	29782
1k5cA	335	3.13e+01		b.80.1.3	72076
1smlA	269	3.24e+01	1smlA	d.157.1.1	42053
1upiA	225	3.30e+01		b.82.1.1	-4823
1ukmB	128	3.31e+01		d.169.1.1	-11625
1dl5A	317	3.34e+01	1dl5A	c.66.1.7	64720
				d.197.1.1	64721
1r8oA	96	3.46e+01			
1nzyA	269	3.66e+01	1nzyA	c.14.1.3	30903
1qwtA	255	3.71e+01		unknown_sccs	-3329
1ijtA	128	3.79e+01	1bfg	b.42.1.1	62510
1ip9A	85	3.88e+01	1ip9A	d.15.2.2	62638
1iznA	286	3.91e+01		e.43.1.1	83847