# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1k4zA	159	1.24e+00		b.80.5.1	72070
1s6tA	285	4.21e+00		c.37.1.5	-7040
1vkjA	285	4.21e+00			
1oeyA	83	6.92e+00		d.15.2.2	-9162
1qtnA	164	1.23e+01	1pauA	c.17.1.1	30999
1pbv	195	1.51e+01	1pbv	a.118.3.1	19179
1vh6A	145	1.68e+01		unknown_sccs	-617
1bbhA	131	1.81e+01	1bbhA	a.24.3.2	16546
1o66A	275	1.98e+01		c.1.12.8	-5590
1rifA	282	2.49e+01		unknown_sccs	-7265
1amuA	563	2.50e+01	1amuA	e.23.1.1	43351
1b24A	188	2.58e+01	1b24A	d.95.2.1	40573
				d.95.2.1	40574
1umnA	165	2.63e+01		a.25.1.1	-656
1jnrB	150	2.82e+01		d.58.1.5	66969
1ip9A	85	2.82e+01	1ip9A	d.15.2.2	62638
1lrzA	426	2.86e+01		a.2.7.4	78167
				d.108.1.4	78168
				d.108.1.4	78169
2arcA	164	2.96e+01	2arcA	b.82.4.1	28148
1m3uA	264	3.00e+01		c.1.12.8	84784
1r8sE	203	3.09e+01		a.118.3.1	-1579
1aly	146	3.16e+01	1aly	b.22.1.1	23856
1iqvA	218	3.17e+01	1rss	a.75.1.1	62661
1kq6A	141	3.25e+01		d.189.1.1	-9926
1h4rA	314	3.33e+01		a.11.2.1	65616
				b.55.1.5	65617
				d.15.1.4	65618