PFRMAT RR
TARGET T0241
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: /projects/compbio/experiments/protein-predict/casp6/networks/NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
PKNVLFQYSTINALMLGQFEGDLTLKDLKLRGDMGLGTINDLDGEMIQMG
TKFYQIDSTGKLSELPESVKTPFAVTTHFEPKEKTTLTNVQDYNQLTKML
EEKFENKNVFYAVKLTGTFKMVKARTVPKQTRPYPQLTEVTKKQSEFEFK
NVKGTLIGFYTPNYAAALNVPGFHLHFITEDKTSGGHVLNLQFDNANLEI
SPIHEFDVQLPHTDDFAHSDLTQVTTSQVHQAESERK
38 72 0 8 0.56865
75 193 0 8 0.3961
11 191 0 8 0.3859
11 56 0 8 0.3604
203 214 0 8 0.3094
11 164 0 8 0.29325
112 198 0 8 0.2618
34 193 0 8 0.2618
39 193 0 8 0.255
79 114 0 8 0.2533
112 159 0 8 0.2346
23 193 0 8 0.2278
8 22 0 8 0.2261
110 206 0 8 0.22185
78 114 0 8 0.22185
28 110 0 8 0.22185
73 140 0 8 0.22015
65 110 0 8 0.20315
34 196 0 8 0.1972
77 159 0 8 0.1955
53 184 0 8 0.1955
31 124 0 8 0.1955
171 193 0 8 0.1921
140 210 0 8 0.1819
103 114 0 8 0.1802
73 210 0 8 0.1802
END