PFRMAT RR
TARGET T0241
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximate of the probability
REMARK as provided by the neural network.
REMARK The number of predictions is limited to .5*sequence_length.
REMARK
METHOD The predictor is an artifical neural network
METHOD using 134 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
METHOD This version uses a new error function designed to improve
METHOD the top scores per protein.
MODEL 1
PKNVLFQYSTINALMLGQFEGDLTLKDLKLRGDMGLGTINDLDGEMIQMG
TKFYQIDSTGKLSELPESVKTPFAVTTHFEPKEKTTLTNVQDYNQLTKML
EEKFENKNVFYAVKLTGTFKMVKARTVPKQTRPYPQLTEVTKKQSEFEFK
NVKGTLIGFYTPNYAAALNVPGFHLHFITEDKTSGGHVLNLQFDNANLEI
SPIHEFDVQLPHTDDFAHSDLTQVTTSQVHQAESERK
38 72 0 8 0.389
8 46 0 8 0.259
8 22 0 8 0.259
75 171 0 8 0.252
73 140 0 8 0.243
10 38 0 8 0.239
7 38 0 8 0.239
15 64 0 8 0.23
25 62 0 8 0.228
75 98 0 8 0.226
4 75 0 8 0.226
112 198 0 8 0.222
22 40 0 8 0.222
203 214 0 8 0.22
11 56 0 8 0.218
40 62 0 8 0.216
22 62 0 8 0.216
11 164 0 8 0.216
11 191 0 8 0.214
75 193 0 8 0.21
7 72 0 8 0.21
71 114 0 8 0.208
20 64 0 8 0.208
10 72 0 8 0.208
143 222 0 8 0.206
99 121 0 8 0.206
3 64 0 8 0.206
73 210 0 8 0.202
53 63 0 8 0.202
127 149 0 8 0.2
66 99 0 8 0.2
91 205 0 8 0.196
41 93 0 8 0.196
34 193 0 8 0.196
49 75 0 8 0.194
14 77 0 8 0.194
11 93 0 8 0.194
30 59 0 8 0.192
26 58 0 8 0.192
23 83 0 8 0.192
14 161 0 8 0.192
46 60 0 8 0.191
91 193 0 8 0.189
23 193 0 8 0.189
135 193 0 8 0.187
62 80 0 8 0.187
49 63 0 8 0.187
30 61 0 8 0.187
14 120 0 8 0.187
8 184 0 8 0.187
156 222 0 8 0.185
41 75 0 8 0.185
15 71 0 8 0.185
13 46 0 8 0.183
11 160 0 8 0.183
97 193 0 8 0.181
39 193 0 8 0.181
9 74 0 8 0.181
165 209 0 8 0.18
23 60 0 8 0.18
11 202 0 8 0.18
88 151 0 8 0.178
11 89 0 8 0.178
110 206 0 8 0.176
75 205 0 8 0.176
18 121 0 8 0.176
1 22 0 8 0.176
6 118 0 8 0.174
11 100 0 8 0.173
88 163 0 8 0.171
64 79 0 8 0.171
57 195 0 8 0.171
53 184 0 8 0.171
52 89 0 8 0.171
46 124 0 8 0.171
40 201 0 8 0.171
8 68 0 8 0.171
179 193 0 8 0.169
152 196 0 8 0.169
148 208 0 8 0.169
103 114 0 8 0.169
87 150 0 8 0.169
87 143 0 8 0.169
78 123 0 8 0.169
63 138 0 8 0.169
63 99 0 8 0.169
12 105 0 8 0.169
8 124 0 8 0.169
127 170 0 8 0.168
91 166 0 8 0.168
77 118 0 8 0.168
31 41 0 8 0.168
26 84 0 8 0.168
1 184 0 8 0.168
1 68 0 8 0.168
121 168 0 8 0.166
93 124 0 8 0.166
61 196 0 8 0.166
50 198 0 8 0.166
18 201 0 8 0.166
11 204 0 8 0.166
9 159 0 8 0.166
1 124 0 8 0.166
171 193 0 8 0.164
111 122 0 8 0.164
78 202 0 8 0.164
77 159 0 8 0.164
59 222 0 8 0.164
13 55 0 8 0.164
93 184 0 8 0.163
78 114 0 8 0.163
31 124 0 8 0.163
20 136 0 8 0.163
16 150 0 8 0.163
175 214 0 8 0.161
137 199 0 8 0.161
118 222 0 8 0.161
101 150 0 8 0.161
END