Best Alignments for T0239

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1awcA/T0239-1awcA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1awcA/T0239-1awcA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 3.5996e+002.0774e+00 1awcA a.4.5.21
1rmrA/T0239-1rmrA-t2k-global-adpstyle5.a2m 1rmrA/T0239-1rmrA-t2k-global-adpstyle5.al 4.7605e+003.9818e+00
1g2rA/T0239-1g2rA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1g2rA/T0239-1g2rA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 5.2266e+001.4655e+00 1g2rA d.192.1.1
1s7oA/T0239-1s7oA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1s7oA/T0239-1s7oA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 9.4938e+006.1434e+00
1k78B/T0239-1k78B-simplesw-adpstyle1.a2m 1k78B/T0239-1k78B-simplesw-adpstyle1.al 1.8110e+012.0473e+01 a.4.5.21
1jbgA/T0239-1jbgA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1jbgA/T0239-1jbgA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.1441e+019.3975e+00 a.6.1.3
1md0A/T0239-1md0A-simplesw-adpstyle1.a2m 1md0A/T0239-1md0A-simplesw-adpstyle1.al 2.2190e+012.5365e+01 a.4.5.21
1mdmB/T0239-1mdmB-simplesw-adpstyle5.a2m 1mdmB/T0239-1mdmB-simplesw-adpstyle5.al 2.3943e+012.7402e+01 a.4.5.21

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001