a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0239 PAE0736, P. aerophilum
- gi|18312142|ref|NP_558809.1|_1:98 hypothetical protein PAE0736 [Pyrobaculum aerophilum str. IM2]
- gi|18159575|gb|AAL62991.1| hypothetical protein [Pyrobaculum aerophilum str. IM2]

              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MKKHIIIKTIPKKEEIISRDLCDCIYYYDNSVICKPIGPSKVYVSTSLENLEKCLQLHYFKKLVK
   2 MKKHIIIKTIPKKEEIISRDLCDCIYYYDNSVICKPIGPSKVYVSTSLENLEKCLQLHYFKKLVK


         70        80        90        
         |         |         |        
   1 NIEIFDEVHNSKPNCDKCLIVEIGGVYFVRRVN
   2 NIEIFDEVHNSKPNCDKCLIVEIGGVYFVRRVN