# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1byb	495	1.27e+00	1byb	c.1.8.1	28790
1q6cA	495	1.33e+00		c.1.8.1	-5300
1j7xA	302	1.41e+00		c.14.1.2	66425
1awcA	110	1.56e+00	1awcA	a.4.5.21	16167
1g2rA	100	2.27e+00	1g2rA	d.192.1.1	60231
1v3hA	495	3.62e+00			
1jbgA	109	4.64e+00		a.6.1.3	66480
1p4xA	250	4.86e+00		a.4.5.28	87784
				a.4.5.28	87785
1c2aA	120	4.98e+00	1c2aA	g.3.13.1	44349
				g.3.13.1	44350
1o86A	589	7.16e+00		d.92.1.5	81177
1f4tA	368	7.22e+00	1f4tA	a.104.1.1	18973
1eb0A	147	7.89e+00		b.107.1.1	64890
				d.58.38.1	64891
1earA	147	8.76e+00		b.107.1.1	64875
				d.58.38.1	64876
1mk0A	97	9.71e+00		d.226.1.1	79216
1etc	110	9.72e+00	1awcA	a.4.5.21	16162
1dfeA	37	1.04e+01	1dfeA	g.42.1.1	45318
1dgzA	37	1.05e+01	1dfeA	g.42.1.1	45319
1booA	323	1.13e+01	1booA	c.66.1.11	34248
3crxA	343	1.24e+01	4crxA	a.60.9.1	18101
				d.163.1.1	42161
1gvjA	146	1.31e+01		a.4.5.21	-293
1oe0A	230	1.33e+01		c.37.1.1	-6976
1lfjA	119	1.46e+01			
1h6kA	757	1.52e+01		unknown_sccs	60675
				unknown_sccs	60676
				unknown_sccs	60677
1j90A	230	1.56e+01		c.37.1.1	66448
1bif	469	1.59e+01	1bif	c.37.1.7	31961
				c.60.1.4	34003
1io7A	368	1.60e+01	1f4tA	a.104.1.1	18971
1mp9A	198	1.69e+01		a.74.1.2	-1127
				a.74.1.2	-1128
1s7oA	113	1.79e+01			
1jr3A	373	1.99e+01		a.80.1.1	63245
				c.37.1.20	63246
1b7yB	785	2.00e+01	1pysB	a.6.1.1	16301
				a.6.1.1	16302
				b.40.4.4	25312
				d.58.13.1	39311
				d.104.1.1	40780
				d.138.1.1	41456
1gp7A	151	2.23e+01		a.133.1.2	76251
1ly2A	130	2.33e+01		g.18.1.1	74335
				g.18.1.1	74336
1mai	131	2.48e+01	1mai	b.55.1.1	26951
1crl	534	2.48e+01	1thg	c.69.1.17	34765
1pysB	785	2.51e+01	1pysB	a.6.1.1	16299
				a.6.1.1	16300
				b.40.4.4	25311
				d.58.13.1	39310
				d.104.1.1	40779
				d.138.1.1	41455
1d8hA	311	2.55e+01	1d8iA	d.63.1.1	39544
1psdA	409	2.59e+01	1psdA	c.2.1.4	30097
				c.23.12.1	31357
				d.58.18.1	39354
1t5yA	190	2.61e+01			
1q7rA	219	2.79e+01		c.23.16.1	-6507
1qgvA	142	2.87e+01	1qgvA	c.47.1.8	33056
1h2vC	771	2.93e+01		unknown_sccs	76592
				unknown_sccs	76593
				unknown_sccs	76594
1lnsA	763	3.02e+01		a.40.2.1	78101
				b.18.1.13	78102
				c.69.1.21	78103
1ijyA	130	3.16e+01	1ijxA	a.141.1.1	62517
1vk8A	106	3.20e+01			
1ghqB	134	3.46e+01	1ghqB	g.18.1.1	60522
				g.18.1.1	60523
1mku	123	3.49e+01	1poa	a.133.1.2	19590
1hdmB	193	3.75e+01	1hdmB	b.1.1.2	21584
				d.19.1.1	38158
1s6bA	119	3.88e+01		a.133.1.2	-1953