# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1s7oA	113	3.93e-01			
1dun	134	2.62e+00	1dun	b.85.4.1	28371
1gvjA	146	3.94e+00		a.4.5.21	-293
1jbgA	109	4.36e+00		a.6.1.3	66480
1awcA	110	4.49e+00	1awcA	a.4.5.21	16167
1g2rA	100	5.12e+00	1g2rA	d.192.1.1	60231
1fo4A	1332	5.53e+00		a.56.1.1	17910
				d.15.4.2	37695
				d.41.1.1	38586
				d.87.2.1	40227
				d.133.1.1	41416
				d.145.1.3	41758
1etc	110	5.81e+00	1awcA	a.4.5.21	16162
1v97A	1332	6.08e+00			
1o86A	589	6.65e+00		d.92.1.5	81177
1dyr	206	6.76e+00	1aoeA	c.71.1.1	34916
1lfjA	119	9.63e+00			
1qdlA	422	9.74e+00	1qdlA	d.161.1.1	42088
1vk8A	106	1.05e+01			
4cms	323	1.08e+01	1smrA	b.50.1.2	26866
1b0nA	111	1.09e+01	1b0nA	a.34.1.1	17001
				a.35.1.3	17064
1c2aA	120	1.44e+01	1c2aA	g.3.13.1	44349
				g.3.13.1	44350
3cms	323	1.72e+01	1smrA	b.50.1.2	26865
1pysB	785	1.75e+01	1pysB	a.6.1.1	16299
				a.6.1.1	16300
				b.40.4.4	25311
				d.58.13.1	39310
				d.104.1.1	40779
				d.138.1.1	41455
1b1uA	122	1.76e+01	1bea	a.52.1.2	17823
1fj7A	101	1.82e+01	1fj7A	d.58.7.1	39209
1s6bA	119	2.06e+01		a.133.1.2	-1953
1rwsA	77	2.21e+01		d.15.3.2	-9182
1bip	122	2.37e+01	1bea	a.52.1.2	17825
1fs0G	230	2.43e+01	1fs0G	c.49.2.1	59999
1a8vA	121	2.65e+01	1a62	a.140.3.1	64712
				b.40.4.5	64713
1c4kA	730	2.70e+01	1ordA	c.23.1.4	31273
				c.67.1.5	34502
				d.125.1.1	41123
1fpzA	212	2.95e+01	1fpzA	c.45.1.1	59976
1qgbA	93	3.15e+01	1qgbA	g.27.1.1	44952
				g.27.1.1	44953
1b33N	67	3.40e+01	1b33N	d.30.1.1	38459
1fgyA	127	3.56e+01	1faoA	b.55.1.1	26976
1brlA	355	3.56e+01	1lucA	c.1.16.1	29553
1o60A	292	3.62e+01		c.1.10.4	-5549
1ordA	730	3.90e+01	1ordA	c.23.1.4	31274
				c.67.1.5	34503
				d.125.1.1	41124