# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1p4xA 250 1.68e-01 a.4.5.28 87784 a.4.5.28 87785 1d8hA 311 4.18e-01 1d8iA d.63.1.1 39544 1g2rA 100 9.82e-01 1g2rA d.192.1.1 60231 1udxA 416 2.71e+00 b.117.1.1 -3546 c.37.1.8 -7101 unknown_sccs -9009 1dmlA 319 3.14e+00 1dmlA d.131.1.2 41380 d.131.1.2 41381 1vk8A 106 3.34e+00 1k2fA 190 3.85e+00 b.8.1.2 68054 1n2fA 142 4.19e+00 d.227.1.1 79853 1lnsA 763 4.64e+00 a.40.2.1 78101 b.18.1.13 78102 c.69.1.21 78103 1ujnA 348 4.74e+00 e.22.1.1 -11998 1gtkA 313 6.28e+00 c.94.1.1 76346 d.50.2.1 76347 1f9zA 135 6.76e+00 1qipA d.32.1.1 38484 1ekgA 127 6.93e+00 1dlxA d.82.2.1 40021 1skoB 130 7.63e+00 2kinA 238 8.10e+00 1bg2 c.37.1.9 32190 1iujA 106 9.62e+00 unknown_sccs -9953 2ptd 298 1.00e+01 2plc c.1.18.2 29605 1s7oA 113 1.12e+01 1fa8A 135 1.17e+01 1qipA d.32.1.1 38486 1fm0E 150 1.31e+01 1fmaE d.41.5.1 38629 1uspA 139 1.32e+01 d.227.1.1 -11179 1jj2S 119 1.35e+01 1ffkQ b.34.5.1 63104 1s72T 120 1.36e+01 1n27A 96 1.43e+01 b.34.9.2 -3585 1t4oA 117 1.43e+01 1mp9A 198 1.45e+01 a.74.1.2 -1127 a.74.1.2 -1128 1s6bB 119 1.56e+01 a.133.1.2 -1954 1h4rA 314 1.61e+01 a.11.2.1 65616 b.55.1.5 65617 d.15.1.4 65618 1o86A 589 1.77e+01 d.92.1.5 81177 2pii 112 1.78e+01 2pii d.58.5.1 39071 1zmeC 70 1.82e+01 1zmeC g.38.1.1 45081 h.1.3.1 45514 1l3aA 228 1.90e+01 d.18.1.2 73531 1lfjA 119 1.91e+01 1ef1A 294 1.94e+01 1ef1A a.11.2.1 16368 b.55.1.5 27003 d.15.1.4 37611 1sr4A 206 1.97e+01 1mk0A 97 2.04e+01 d.226.1.1 79216 1hmt 132 2.06e+01 1hmt b.60.1.2 27169 1ly2A 130 2.12e+01 g.18.1.1 74335 g.18.1.1 74336 1ntvA 152 2.14e+01 b.55.1.2 86168 1e53A 59 2.31e+01 1e53A g.49.1.2 45356 1cojA 212 2.37e+01 1avmA a.2.11.1 15737 d.44.1.1 38734 1bif 469 2.43e+01 1bif c.37.1.7 31961 c.60.1.4 34003 1e7uA 961 2.47e+01 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1n0lA 224 2.48e+01 b.1.11.1 79744 b.7.2.1 79745 1jyaA 130 2.53e+01 d.198.1.1 67453 1crb 134 2.60e+01 1hmt b.60.1.2 27220 1cbf 285 2.66e+01 1cbf c.90.1.1 35587 1ghqB 134 3.11e+01 1ghqB g.18.1.1 60522 g.18.1.1 60523 1nz0A 118 3.17e+01 d.14.1.2 86433 1ifc 132 3.24e+01 b.60.1.2 27173 1lfo 128 3.34e+01 1hmt b.60.1.2 27223 1se9A 126 3.39e+01 d.15.1.1 -9145 3vub 101 3.44e+01 3vub b.34.6.1 24613 1nzaA 103 3.68e+01 d.58.5.2 86444 1k8kD 300 3.70e+01 d.198.2.1 68309 d.198.2.1 68310 1cbs 137 3.86e+01 1hmt b.60.1.2 27201 1glcG 501 3.91e+01 1glcG c.55.1.4 33519 c.55.1.4 33520 1imt 80 3.91e+01 1imt g.3.10.1 44201 g.3.10.1 44202 1kgsA 225 3.97e+01 a.4.6.1 68596 c.23.1.1 68597