# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1j7xA	302	1.56e+00		c.14.1.2	66425
1ly2A	130	4.79e+00		g.18.1.1	74335
				g.18.1.1	74336
1byb	495	7.43e+00	1byb	c.1.8.1	28790
1q6cA	495	7.48e+00		c.1.8.1	-5300
1p4xA	250	8.62e+00		a.4.5.28	87784
				a.4.5.28	87785
1mk0A	97	9.50e+00		d.226.1.1	79216
1qk8A	146	9.88e+00	1ewxA	c.47.1.10	33061
1ghqB	134	1.09e+01	1ghqB	g.18.1.1	60522
				g.18.1.1	60523
1oe0A	230	1.11e+01		c.37.1.1	-6976
1lfjA	119	1.21e+01			
1earA	147	1.22e+01		b.107.1.1	64875
				d.58.38.1	64876
1v3hA	495	1.31e+01			
1g2rA	100	1.37e+01	1g2rA	d.192.1.1	60231
1d8hA	311	1.42e+01	1d8iA	d.63.1.1	39544
1o86A	589	1.56e+01		d.92.1.5	81177
1s6bB	119	1.57e+01		a.133.1.2	-1954
1s7oA	113	1.77e+01			
1mp9A	198	1.92e+01		a.74.1.2	-1127
				a.74.1.2	-1128
1neiA	60	1.94e+01		unknown_sccs	-10324
1c8bA	371	2.04e+01	1c8bA	c.56.1.2	59082
1psdA	409	2.05e+01	1psdA	c.2.1.4	30097
				c.23.12.1	31357
				d.58.18.1	39354
1dfeA	37	2.14e+01	1dfeA	g.42.1.1	45318
1r4yA	136	2.21e+01		d.1.1.3	-8813
1ox3A	109	2.22e+01		h.1.17.1	-12938
2nacA	393	2.52e+01	2nadA	c.2.1.4	30088
				c.23.12.1	31348
1s6bA	119	2.53e+01		a.133.1.2	-1953
1n2fA	142	2.81e+01		d.227.1.1	79853
1cojA	212	2.82e+01	1avmA	a.2.11.1	15737
				d.44.1.1	38734
1bkpA	278	2.92e+01	1bkpA	d.117.1.1	41029
1s0yB	71	3.03e+01		d.80.1.1	-10442
1lk9A	448	3.23e+01		c.67.1.1	78057
1uspA	139	3.24e+01		d.227.1.1	-11179
1qnxA	209	3.29e+01	1qnxA	d.111.1.1	40914
1o8xA	146	3.50e+01		c.47.1.10	86681
2ptd	298	3.60e+01	2plc	c.1.18.2	29605
1s9rA	410	3.66e+01		unknown_sccs	-10989
1qgvA	142	3.81e+01	1qgvA	c.47.1.8	33056