# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1p4xA	250	1.32e+00		a.4.5.28	87784
				a.4.5.28	87785
1d8hA	311	2.30e+00	1d8iA	d.63.1.1	39544
1lnsA	763	2.96e+00		a.40.2.1	78101
				b.18.1.13	78102
				c.69.1.21	78103
2nacA	393	5.98e+00	2nadA	c.2.1.4	30088
				c.23.12.1	31348
1ef1A	294	6.20e+00	1ef1A	a.11.2.1	16368
				b.55.1.5	27003
				d.15.1.4	37611
1m4vA	204	7.93e+00		b.40.2.2	74459
				d.15.6.1	74460
1g2rA	100	7.94e+00	1g2rA	d.192.1.1	60231
1ekgA	127	8.13e+00	1dlxA	d.82.2.1	40021
1o86A	589	9.81e+00		d.92.1.5	81177
1s7oA	113	1.04e+01			
1mk0A	97	1.16e+01		d.226.1.1	79216
1iujA	106	1.20e+01		unknown_sccs	-9953
1qk8A	146	1.27e+01	1ewxA	c.47.1.10	33061
1vk8A	106	1.30e+01			
1jj2S	119	1.38e+01	1ffkQ	b.34.5.1	63104
1s72T	120	1.38e+01			
1cbs	137	1.46e+01	1hmt	b.60.1.2	27201
1j7xA	302	1.53e+01		c.14.1.2	66425
1lfjA	119	1.59e+01			
1q6cA	495	1.65e+01		c.1.8.1	-5300
1byb	495	1.72e+01	1byb	c.1.8.1	28790
1s6bB	119	1.88e+01		a.133.1.2	-1954
1dfeA	37	2.12e+01	1dfeA	g.42.1.1	45318
1imt	80	2.33e+01	1imt	g.3.10.1	44201
				g.3.10.1	44202
1o8vA	134	2.38e+01		b.60.1.2	86680
1c2aA	120	2.72e+01	1c2aA	g.3.13.1	44349
				g.3.13.1	44350
1v3hA	495	3.08e+01			
1cbf	285	3.08e+01	1cbf	c.90.1.1	35587
1cojA	212	3.23e+01	1avmA	a.2.11.1	15737
				d.44.1.1	38734
1bif	469	3.25e+01	1bif	c.37.1.7	31961
				c.60.1.4	34003
1s6bA	119	3.27e+01		a.133.1.2	-1953
1dmlA	319	3.37e+01	1dmlA	d.131.1.2	41380
				d.131.1.2	41381
1ujnA	348	3.51e+01		e.22.1.1	-11998
1n2fA	142	3.60e+01		d.227.1.1	79853
1fjsL	52	3.66e+01	1hcgB	g.3.11.1	44226
4crxA	322	3.67e+01	4crxA	a.60.9.1	18095
				d.163.1.1	42155
1oaqL	120	3.75e+01		b.1.1.1	-2163