# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1k8kD	300	3.07e+00		d.198.2.1	68309
				d.198.2.1	68310
1earA	147	3.70e+00		b.107.1.1	64875
				d.58.38.1	64876
1p4xA	250	3.81e+00		a.4.5.28	87784
				a.4.5.28	87785
1d8hA	311	5.21e+00	1d8iA	d.63.1.1	39544
1mp9A	198	5.99e+00		a.74.1.2	-1127
				a.74.1.2	-1128
1j7xA	302	6.53e+00		c.14.1.2	66425
1mk0A	97	8.75e+00		d.226.1.1	79216
1g2rA	100	9.25e+00	1g2rA	d.192.1.1	60231
1qgvA	142	1.06e+01	1qgvA	c.47.1.8	33056
1ly2A	130	1.07e+01		g.18.1.1	74335
				g.18.1.1	74336
1psdA	409	1.09e+01	1psdA	c.2.1.4	30097
				c.23.12.1	31357
				d.58.18.1	39354
1ef1A	294	1.10e+01	1ef1A	a.11.2.1	16368
				b.55.1.5	27003
				d.15.1.4	37611
1h6kA	757	1.15e+01		unknown_sccs	60675
				unknown_sccs	60676
				unknown_sccs	60677
1s6bB	119	1.37e+01		a.133.1.2	-1954
1mai	131	1.49e+01	1mai	b.55.1.1	26951
1s6bA	119	1.56e+01		a.133.1.2	-1953
1lmeA	176	1.64e+01		d.167.1.1	84629
1s7oA	113	1.68e+01			
1q6cA	495	1.72e+01		c.1.8.1	-5300
1lfjA	119	1.79e+01			
1iujA	106	1.80e+01		unknown_sccs	-9953
1byb	495	1.80e+01	1byb	c.1.8.1	28790
1poa	118	1.85e+01	1poa	a.133.1.2	19514
1o86A	589	1.86e+01		d.92.1.5	81177
1ghqB	134	2.06e+01	1ghqB	g.18.1.1	60522
				g.18.1.1	60523
1q0bA	367	2.12e+01		c.37.1.9	-7105
1fiuA	286	2.22e+01	1fiuA	c.52.1.10	33317
1vk8A	106	2.56e+01			
1ab8A	220	2.98e+01	1azsA	d.58.29.1	39414
1h9oA	112	3.02e+01	1qadA	d.93.1.1	60837
1c0pA	363	3.08e+01	1an9A	c.4.1.2	30647
				d.16.1.3	37934
1b7yB	785	3.17e+01	1pysB	a.6.1.1	16301
				a.6.1.1	16302
				b.40.4.4	25312
				d.58.13.1	39311
				d.104.1.1	40780
				d.138.1.1	41456
1aqzA	149	3.23e+01	1aqzA	d.1.1.3	36238
1ry6A	360	3.32e+01		c.37.1.9	-7111
1aisA	182	3.33e+01	1ytbA	d.129.1.1	41288
				d.129.1.1	41289
1o8vA	134	3.58e+01		b.60.1.2	86680
1oe0A	230	3.67e+01		c.37.1.1	-6976
1jb0D	138	3.75e+01	1jb0D	d.187.1.1	62823
1c2aA	120	3.78e+01	1c2aA	g.3.13.1	44349
				g.3.13.1	44350
1svsA	353	3.91e+01			
1r0wA	286	3.93e+01		c.37.1.12	-7158