CreatePredAlphaCost pred_alpha2k alpha11 T0238.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0238.t04.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 20 near_backbone 3 way_back 3 dry5 20 dry6.5 30 dry8 15 dry12 5 \ phobic_fit 4 \ sidechain 1 \ bystroff 5 \ soft_clashes 20 backbone_clashes 2 \ break 40 \ pred_alpha2k 1 \ pred_alpha04 6 \ known_ssbond 1 \ hbond_geom 1 \ hbond_geom_backbone 2 // Add the following for extra-cellular proteins: # maybe_ssbond 0.5 SSBOND C22 C25 1