# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jf0A 195 4.28e-01 1ej3A a.39.1.5 62926 1q4mA 221 5.32e-01 unknown_sccs -1910 1rqjA 299 6.69e-01 a.128.1.1 -1774 1be3C 379 1.12e+00 1be3C f.32.1.1 75805 f.21.1.2 75806 1pq1A 196 1.13e+00 f.1.4.1 -12055 1qv1A 195 1.17e+00 a.39.1.5 -830 2bidA 197 1.31e+00 2bidA f.1.4.1 43398 1af3 196 1.32e+00 1maz f.1.4.1 43397 1l6nA 289 1.36e+00 a.61.1.1 73624 a.73.1.1 73625 1el4A 195 1.62e+00 1ej3A a.39.1.5 59453 1n97A 389 1.67e+00 a.104.1.1 80335 1mhyB 395 1.95e+00 1mtyB a.25.1.2 16781 1tbmA 326 2.30e+00 1htjF 210 2.45e+00 1htjF a.91.1.1 61254 1jcrA 377 2.50e+00 a.118.6.1 66506 1qcrC 378 2.56e+00 1be3C f.32.1.1 75931 f.21.1.2 75932 1bxlA 181 3.00e+00 1maz f.1.4.1 43396 1maz 221 3.12e+00 1maz f.1.4.1 43393 1jf2A 195 3.23e+00 1ej3A a.39.1.5 62930 1ld8A 382 3.24e+00 a.118.6.1 73838 1vk3A 615 3.41e+00 d.79.4.1 -10416 d.79.4.1 -10417 d.139.1.1 -11154 d.139.1.1 -11155 3bct 457 3.44e+00 3bct a.118.1.1 19112 1i7wA 538 3.73e+00 3bct a.118.1.1 61909 1a8i 842 3.92e+00 1a8i c.87.1.4 35490 1ks8A 433 4.42e+00 a.102.1.2 77519 1gw5A 621 4.46e+00 a.118.1.10 70629 1flcB 175 4.47e+00 1flcB h.3.1.1 45716 1bzpA 153 4.52e+00 1a6m a.1.1.2 15020 1hkbA 917 4.88e+00 1qhaA c.55.1.3 33479 c.55.1.3 33480 c.55.1.3 33481 c.55.1.3 33482 1l2iA 261 5.37e+00 a.123.1.1 73503 1jcqA 382 5.71e+00 a.118.6.1 66504 1ow4A 129 5.92e+00 a.39.2.1 -876 1ash 150 6.11e+00 1ash a.1.1.2 15622 1ca1 370 6.14e+00 1ca1 a.124.1.1 19340 b.12.1.3 23648 1ge9A 184 6.80e+00 1dd5A d.67.3.1 60463 1hiwA 133 7.10e+00 1hiwA a.61.1.1 18122 1mgn 154 7.78e+00 1a6m a.1.1.2 15097 1qhaA 917 7.89e+00 1qhaA c.55.1.3 33467 c.55.1.3 33468 c.55.1.3 33469 c.55.1.3 33470 1d8dA 377 8.03e+00 1ft1A a.118.6.1 19185 2spo 154 8.10e+00 1a6m a.1.1.2 15053 1s5lA 344 8.20e+00 1hg2A 289 8.20e+00 1hg5A unknown_sccs -401 unknown_sccs -1630 1nrfA 262 8.57e+00 e.3.1.1 -11780 1l7vA 326 8.57e+00 f.22.1.1 73672 1t7pA 698 8.74e+00 1t7pA c.55.3.5 33712 e.8.1.1 43005 1umvX 122 8.80e+00 a.133.1.2 -1994 1h5uA 842 8.95e+00 1a8i c.87.1.4 60655 1hg4A 279 9.05e+00 1lbd a.123.1.1 19333 1eysL 280 9.12e+00 6prcL f.26.1.1 43515 1lrzA 426 9.53e+00 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1ezwA 349 9.74e+00 1ezwA c.1.16.3 29558 1cnt2 187 9.84e+00 1cnt3 1hkcA 917 9.95e+00 1qhaA c.55.1.3 33475 c.55.1.3 33476 c.55.1.3 33477 c.55.1.3 33478 1ci8A 392 1.02e+01 e.3.1.1 64765 1qbqA 333 1.03e+01 1ft1A a.118.6.1 19187 1br0A 120 1.05e+01 a.47.2.1 17772 1ej3A 191 1.09e+01 1ej3A a.39.1.5 17259 3erdA 261 1.10e+01 3erdA a.123.1.1 19293 1foeA 377 1.10e+01 1foeA a.87.1.1 18517 b.55.1.1 26969 1cnt3 187 1.12e+01 1cnt3 1ah7 245 1.14e+01 1ah7 a.124.1.1 19339 2bgu 351 1.15e+01 1c3jA c.87.1.1 35460 1jg7A 351 1.15e+01 1c3jA c.87.1.1 62945 1c3jA 351 1.16e+01 1c3jA c.87.1.1 35459 1jixA 351 1.16e+01 1c3jA c.87.1.1 63081 1hf8A 289 1.16e+01 1hg5A unknown_sccs -399 unknown_sccs -1628 1id3B 102 1.19e+01 a.22.1.1 66113 1bsjA 168 1.19e+01 1bs4A d.167.1.1 42302 1aj3 110 1.20e+01 1cunA a.7.1.1 16319 1ci9A 392 1.24e+01 e.3.1.1 64767 1qqqA 264 1.25e+01 1bkpA d.117.1.1 40931 1cnt1 187 1.29e+01 1cnt3 1s6cA 183 1.33e+01 a.39.1.5 -858 2ki5A 366 1.33e+01 1qhiA c.37.1.1 31862 1tys 265 1.35e+01 1bkpA d.117.1.1 40937 1hwxA 501 1.36e+01 1hwyA c.2.1.7 30250 c.58.1.1 33898 1jnrA 643 1.37e+01 a.7.3.1 66966 c.3.1.4 66967 d.168.1.1 66968 1d9cA 121 1.43e+01 1d9cA a.26.1.3 16901 1hbzA 498 1.45e+01 1cf9A e.5.1.1 60937 1gweA 503 1.50e+01 e.5.1.1 70667 1ldjA 760 1.58e+01 a.4.5.34 73847 a.118.17.1 73848 e.40.1.1 73849 1ez3A 127 1.59e+01 1dn1B a.47.2.1 17768 1ssqA 267 1.60e+01 1czaN 917 1.69e+01 1qhaA c.55.1.3 33463 c.55.1.3 33464 c.55.1.3 33465 c.55.1.3 33466 1jdhA 529 1.70e+01 a.118.1.1 66549 1cg5A 141 1.71e+01 1abwA a.1.1.2 15406 1aj8A 371 1.79e+01 1aj8A a.103.1.1 18900 1gdj 153 1.84e+01 2gdm a.1.1.2 15213 2tscA 264 1.86e+01 1bkpA d.117.1.1 40952 1hwyA 501 1.87e+01 1hwyA c.2.1.7 30262 c.58.1.1 33910 1a6m 151 1.88e+01 1a6m a.1.1.2 15018 1v92A 46 1.96e+01 a.5.2.3 -357 1rwyA 109 1.97e+01 a.39.1.4 -825 1mbd 153 1.98e+01 1a6m a.1.1.2 15033 1q8iA 783 2.03e+01 c.55.3.5 -7635 e.8.1.1 -11885 1dbhA 354 2.04e+01 1awe a.87.1.1 18514 b.55.1.1 26967 1lvk 762 2.07e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1ft1A 377 2.10e+01 1ft1A a.118.6.1 19186 1fjgM 126 2.13e+01 1fjfM a.156.1.1 16293 2gdm 153 2.13e+01 2gdm a.1.1.2 15212 1ka3A 90 2.14e+01 a.150.1.1 72239 1bs4A 168 2.17e+01 1bs4A d.167.1.1 42287 1icjA 168 2.17e+01 1bs4A d.167.1.1 42284 1evsA 187 2.17e+01 1evsA a.26.1.1 16845 1lh1 153 2.18e+01 2gdm a.1.1.2 15222 2lh2 153 2.18e+01 2gdm a.1.1.2 15220 1gpb 842 2.22e+01 1a8i c.87.1.4 35478 1kx9A 112 2.25e+01 unknown_sccs 77602 1kbjA 412 2.32e+01 c.1.4.1 72280 1h97A 147 2.33e+01 1h97A a.1.1.2 60812 1gnlA 544 2.33e+01 e.26.1.1 70287 1rfmA 344 2.33e+01 c.122.1.1 -8032 1fcbA 511 2.35e+01 1gox c.1.4.1 28620 d.120.1.1 41087 1otvA 259 2.35e+01 unknown_sccs -1915 1odfA 290 2.38e+01 c.37.1.6 -7045 1dguA 183 2.40e+01 1dguA a.39.1.5 17333 1evfA 264 2.41e+01 1bkpA d.117.1.1 40932 3nodB 423 2.41e+01 1nseA d.174.1.1 42513 1n00A 321 2.42e+01 a.65.1.1 85241 3ertA 261 2.44e+01 3erdA a.123.1.1 19292 1a8b 318 2.52e+01 1avc a.65.1.1 18171 1ek1A 554 2.70e+01 1cr6B c.108.1.2 43335 c.69.1.11 34685 1ua4A 455 2.78e+01 c.72.1.3 -8416 1cqzA 554 2.79e+01 1cr6B c.108.1.2 43339 c.69.1.11 34689 1nq7A 244 2.83e+01 a.123.1.1 -1682 1qo7A 394 2.88e+01 1qo7A c.69.1.11 34697 1hq3D 103 2.92e+01 1aoiB a.22.1.1 16464 1e70M 501 2.93e+01 1e70M c.1.8.4 28926 1g2aA 168 2.94e+01 d.167.1.1 65109 1iygA 133 2.97e+01 a.118.8.1 76947 1dn1B 267 3.00e+01 1dn1B a.47.2.1 17771 1fnnA 389 3.01e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1e3dB 542 3.04e+01 1h2rL e.18.1.1 59189 1umnA 165 3.06e+01 a.25.1.1 -656 1alu 186 3.11e+01 1alu a.26.1.1 16826 1uaaA 673 3.21e+01 1pjr c.37.1.19 32401 c.37.1.19 32402 1ik9A 213 3.27e+01 b.59.1.1 66176 h.1.11.1 66177 1e4mM 501 3.30e+01 1e70M c.1.8.4 59226 1aisA 182 3.34e+01 1ytbA d.129.1.1 41288 d.129.1.1 41289 1e6qM 501 3.37e+01 1e70M c.1.8.4 28920 1j9aA 184 3.42e+01 c.55.3.5 84135 1gmjA 84 3.43e+01 h.4.8.1 65310 2yhx 457 3.47e+01 2yhx i.12.1.1 46024 1d0yA 761 3.51e+01 1lvk b.34.3.1 24581 c.37.1.9 32178 1n46A 258 3.53e+01 a.123.1.1 85315 1p9bA 442 3.57e+01 c.37.1.10 -7115 1g3jA 532 3.70e+01 3bct a.118.1.1 19114 1fd9A 213 3.70e+01 1fd9A d.26.1.1 59771 1c8kA 842 3.70e+01 1a8i c.87.1.4 35491 1q59A 172 3.76e+01 f.1.4.1 -12062 1csc 433 3.91e+01 1csh a.103.1.1 18886