# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1aihA	170	1.14e+00	1aihA	d.163.1.1	42149
1aisA	182	1.59e+00	1ytbA	d.129.1.1	41288
				d.129.1.1	41289
1mr3F	181	2.09e+00		c.37.1.8	79422
1foeA	377	2.50e+00	1foeA	a.87.1.1	18517
				b.55.1.1	26969
1f2tB	148	3.02e+00	1f2tB		
1gseA	221	4.25e+00	1pgtA	a.45.1.1	17667
				c.47.1.5	32961
1kepA	348	5.06e+00		c.2.1.2	68536
1jyoE	105	5.32e+00		d.184.1.2	67487
1oc2A	348	6.04e+00		c.2.1.2	-5753
1kqfB	294	7.27e+00		d.58.1.5	75900
				f.23.22.1	75901
1k3lA	221	7.35e+00		a.45.1.1	77229
				c.47.1.5	77230
1r5qA	102	7.40e+00		unknown_sccs	-965
1k3yA	221	7.49e+00		a.45.1.1	77245
				c.47.1.5	77246
1ffkM	148	8.11e+00	1ffkM	a.94.1.1	18740
1a1d	146	8.97e+00	1a1d	b.40.4.8	25394
1fo1A	271	9.25e+00	1fo1A	c.10.2.3	30869
				d.58.7.2	39213
1cunA	213	1.10e+01	1cunA	a.7.1.1	16313
				a.7.1.1	16314
2bidA	197	1.34e+01	2bidA	f.1.4.1	43398
1hdmA	201	1.37e+01	1iakA	b.1.1.2	21583
				d.19.1.1	38157
1s72P	149	1.40e+01			
1jj2O	148	1.69e+01	1ffkM	a.94.1.1	63100
1h6qA	168	1.75e+01	1h6qA	b.88.1.2	60692
1mu5A	471	1.78e+01		a.156.1.3	79472
				d.14.1.3	79473
				d.122.1.2	79474
2bgu	351	1.84e+01	1c3jA	c.87.1.1	35460
1qwlA	505	1.88e+01		e.5.1.1	-11823
1q4mA	221	1.89e+01		unknown_sccs	-1910
1n1jB	97	1.96e+01		a.22.1.3	79814
5eat	548	2.11e+01	5eat	a.102.4.1	18853
				a.128.1.3	19445
1c3jA	351	2.24e+01	1c3jA	c.87.1.1	35459
1f5xA	208	2.25e+01	1f5xA	a.87.1.1	18516
1g9lA	144	2.32e+01	1g9lA	a.144.1.1	60399
1jfmA	174	2.32e+01		d.19.1.1	66640
1q0bA	367	2.42e+01		c.37.1.9	-7105
1uk5A	111	2.45e+01		a.7.7.1	-395
1ji8A	111	2.51e+01		d.203.1.1	66733
1rjdA	334	2.54e+01		unknown_sccs	-8079
3hhrB	203	2.60e+01	1axiB	b.1.2.1	22005
				b.1.2.1	22006
1bxlA	181	2.63e+01	1maz	f.1.4.1	43396
1jg7A	351	2.80e+01	1c3jA	c.87.1.1	62945
1jixA	351	2.94e+01	1c3jA	c.87.1.1	63081
1tiyA	164	2.95e+01			
1izlC	473	2.99e+01		i.5.1.1	76996
5eau	548	3.02e+01	5eat	a.102.4.1	18851
				a.128.1.3	19443
1f2tA	149	3.07e+01	1f2tA	c.37.1.12	32373
1n87A	56	3.10e+01		g.44.1.2	85390
1s72N	187	3.12e+01			
8adh	374	3.23e+01	2ohxA	b.35.1.2	24690
				c.2.1.1	29706
1lngA	87	3.24e+01		d.201.1.1	74045
1qs1A	462	3.43e+01	1qs1A	d.166.1.1	42260
				d.166.1.1	42261
1ltlA	279	3.48e+01		b.40.4.11	84701
2trcP	217	3.57e+01	1b9yC	c.47.1.6	33051
1rwyA	109	3.58e+01		a.39.1.4	-825
3vtk	343	3.79e+01	1qhiA	c.37.1.1	31884
1l8wA	348	3.86e+01		a.154.1.1	73704
1kgdA	180	3.90e+01		c.37.1.1	68582