# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q4mA 221 4.48e-01 unknown_sccs -1910 1dxrL 273 1.98e+00 6prcL f.26.1.1 43431 1k8kG 151 2.05e+00 a.118.13.1 68313 1pyfA 312 2.70e+00 c.1.7.1 -5251 5csmA 256 2.71e+00 5csmA a.130.1.2 19494 1ho8A 480 3.15e+00 1ho8A a.118.1.9 61107 1v1rA 400 3.70e+00 1q1aA 289 3.74e+00 c.31.1.5 -6781 2bidA 197 4.25e+00 2bidA f.1.4.1 43398 1k8tA 510 4.50e+00 e.41.1.1 68316 1ihgA 370 5.18e+00 2cpl a.118.8.1 62380 b.62.1.1 62381 1eysL 280 5.26e+00 6prcL f.26.1.1 43515 1kxpD 458 5.29e+00 a.126.1.1 73160 a.126.1.1 73161 a.126.1.1 73162 1mv8A 436 5.30e+00 a.100.1.4 85128 c.2.1.6 85129 c.26.3.1 85130 1uk5A 111 5.40e+00 a.7.7.1 -395 1rzhM 307 6.37e+00 f.26.1.1 -12227 1cjaA 342 6.72e+00 1cjaA d.144.1.3 41708 1qo0D 196 6.81e+00 1qo0D c.23.1.3 31125 1t0hB 224 8.39e+00 1ngkA 128 8.40e+00 a.1.1.1 85673 1kx5A 135 8.52e+00 a.22.1.1 77593 1kyqA 274 8.85e+00 c.2.1.11 73281 e.37.1.1 73282 1furA 467 9.81e+00 1furA a.127.1.1 19403 1hf8A 289 9.91e+00 1hg5A unknown_sccs -399 unknown_sccs -1628 1hnjA 317 1.11e+01 1hn9A c.95.1.1 35969 c.95.1.1 35970 1i50C 318 1.13e+01 d.74.3.1 61756 d.181.1.1 61757 1jx2B 315 1.13e+01 c.37.1.8 67404 1olsA 400 1.15e+01 c.36.1.11 -6959 1fsu 492 1.22e+01 1auk c.76.1.2 35032 1in4A 334 1.28e+01 1hqcA a.4.5.11 62597 c.37.1.20 62598 1pi1A 185 1.31e+01 unknown_sccs -762 1rw2A 152 1.32e+01 unknown_sccs -1645 1rzhL 281 1.40e+01 f.26.1.1 -12215 1miwA 404 1.58e+01 a.173.1.1 79162 d.218.1.4 79163 1dbhA 354 1.60e+01 1awe a.87.1.1 18514 b.55.1.1 26967 1lngA 87 1.61e+01 d.201.1.1 74045 1fnc 314 1.66e+01 1fnc b.43.4.2 25627 c.25.1.1 31517 1c7qA 445 1.66e+01 2pgi c.80.1.2 35307 1qwlA 505 1.67e+01 e.5.1.1 -11823 1jfmA 174 1.69e+01 d.19.1.1 66640 5pal 109 1.69e+01 1a75A a.39.1.4 17215 1nrfA 262 1.75e+01 e.3.1.1 -11780 1l8nA 679 1.81e+01 c.1.8.10 84564 d.92.2.2 84565 3xis 387 1.93e+01 4xis c.1.15.3 29423 1v54D 147 1.96e+01 f.23.1.1 -12100 1fnd 314 1.98e+01 1fnc b.43.4.2 25626 c.25.1.1 31516 1sglA 209 2.03e+01 1hu3A 260 2.10e+01 1hu3A unknown_sccs 19137 2occD 147 2.10e+01 1ocrD f.23.1.1 43521 1jr2A 286 2.24e+01 c.113.1.1 67111 4xis 387 2.24e+01 4xis c.1.15.3 29421 1alu 186 2.26e+01 1alu a.26.1.1 16826 1rwtA 232 2.56e+01 unknown_sccs -12345 1hn0A 1021 2.62e+01 a.102.3.2 83616 b.18.1.17 83617 b.24.1.1 83618 b.30.5.2 83619 1eexG 173 2.64e+01 1dioG a.23.2.1 16490 1lrzA 426 2.70e+01 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1uedA 406 2.71e+01 a.104.1.1 -1459 1in6A 334 2.84e+01 1hqcA a.4.5.11 62601 c.37.1.20 62602 1pq1A 196 2.90e+01 f.1.4.1 -12055 1f6fA 199 2.92e+01 1f6fA a.26.1.1 16839 1mr3F 181 2.92e+01 c.37.1.8 79422 1bed 181 2.93e+01 1fvkA unknown_sccs -7444 1ufbA 127 2.95e+01 a.24.16.3 -635 1jwgA 147 3.18e+01 a.118.9.2 71911 1fqiA 147 3.35e+01 1agrE a.91.1.1 18542 1pinA 163 3.37e+01 1pinA b.72.1.1 27802 d.26.1.1 38431 1evsA 187 3.37e+01 1evsA a.26.1.1 16845 1s3jA 155 3.39e+01 a.4.5.28 -227 1nfp 228 3.47e+01 1nfp c.1.16.2 29555 1ox3A 109 3.55e+01 h.1.17.1 -12938 1d8hA 311 3.61e+01 1d8iA d.63.1.1 39544 1pnsC 206 3.63e+01 i.1.1.1 88170 1jy2O 56 3.67e+01 h.1.8.1 67441 1jalA 363 3.70e+01 c.37.1.8 84138 d.15.10.2 84139 1h6qA 168 3.81e+01 1h6qA b.88.1.2 60692 1ecrA 309 3.82e+01 1ecrA e.2.1.1 42678 1su4A 994 3.87e+01 b.82.7.1 -4927 c.108.1.7 -6854 d.220.1.1 -11668 f.33.1.1 -12333 1d8dA 377 3.87e+01 1ft1A a.118.6.1 19185 1ezwA 349 3.96e+01 1ezwA c.1.16.3 29558 1fnoA 417 3.99e+01 c.56.5.4 75841 d.58.19.1 70145