# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1eluA 390 1.88e-01 1elqA c.67.1.3 34434 1elqA 390 1.93e-01 1elqA c.67.1.3 34436 1mr3F 181 6.22e-01 c.37.1.8 79422 1v4xA 144 7.83e-01 3pmgA 561 1.00e+00 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1mwwA 128 1.43e+00 unknown_sccs -10451 1fb6A 105 2.08e+00 1thx c.47.1.1 32739 1ass 159 4.24e+00 1a6dA c.8.5.2 30818 1r5iD 216 4.28e+00 unknown_sccs -1272 1mbyA 88 4.96e+00 d.223.1.1 78931 1hx1B 114 5.32e+00 1hx1B a.7.7.1 61350 1flcB 175 5.52e+00 1flcB h.3.1.1 45716 1nh1A 330 6.14e+00 unknown_sccs -11798 1ry9A 145 6.24e+00 d.198.1.1 -9020 1d9cA 121 6.24e+00 1d9cA a.26.1.3 16901 1iq4A 179 6.28e+00 1iq4A d.77.1.1 62641 1rfmA 344 6.37e+00 c.122.1.1 -8032 1uk5A 111 6.69e+00 a.7.7.1 -395 1vj1A 363 8.55e+00 b.35.1.2 -3728 c.2.1.1 -5752 1jy2O 56 8.86e+00 h.1.8.1 67441 1o1yA 239 9.14e+00 c.23.16.1 86554 6gsvA 217 9.61e+00 1b8xA a.45.1.1 17633 c.47.1.5 32925 1mtyG 162 9.90e+00 1mtyG a.23.3.1 16498 1nk4A 580 1.06e+01 c.55.3.5 -7625 e.8.1.1 -11875 1aihA 170 1.11e+01 1aihA d.163.1.1 42149 1v32A 101 1.13e+01 a.42.1.1 -912 1dbhA 354 1.13e+01 1awe a.87.1.1 18514 b.55.1.1 26967 1pmmA 466 1.17e+01 c.67.1.6 -8159 1mijA 152 1.20e+01 a.4.1.1 79150 1mw7A 240 1.20e+01 e.39.1.1 79557 1lngA 87 1.28e+01 d.201.1.1 74045 1j55A 95 1.29e+01 a.39.1.2 77078 2arcA 164 1.33e+01 2arcA b.82.4.1 28148 1jztA 246 1.37e+01 c.104.1.1 63319 1seiA 130 1.37e+01 1seiA d.140.1.1 41463 1jfmA 174 1.38e+01 d.19.1.1 66640 1o0uA 429 1.45e+01 c.118.1.1 80743 1b4pA 217 1.49e+01 a.45.1.1 83158 c.47.1.5 83159 1ufbA 127 1.51e+01 a.24.16.3 -635 1l8wA 348 1.56e+01 a.154.1.1 73704 2a0b 125 1.57e+01 2a0b a.24.10.1 16630 1ngkA 128 1.63e+01 a.1.1.1 85673 1in6A 334 1.67e+01 1hqcA a.4.5.11 62601 c.37.1.20 62602 1l3sA 580 1.67e+01 c.55.3.5 84521 e.8.1.1 84522 1lox 662 1.79e+01 1lox a.119.1.2 19238 b.12.1.1 23638 1dkzA 219 1.90e+01 1dkzA unknown_sccs -445 unknown_sccs -3060 1qqqA 264 2.00e+01 1bkpA d.117.1.1 40931 1jwgA 147 2.01e+01 a.118.9.2 71911 1j7nA 776 2.03e+01 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 1mtzA 293 2.05e+01 c.69.1.7 79467 1urfA 81 2.10e+01 a.2.6.1 -105 1s0yB 71 2.12e+01 d.80.1.1 -10442 1evfA 264 2.12e+01 1bkpA d.117.1.1 40932 1ec5A 50 2.14e+01 1ec5A k.8.1.1 46421 1jj2O 148 2.20e+01 1ffkM a.94.1.1 63100 1yge 839 2.21e+01 1yge a.119.1.1 19234 b.12.1.1 23634 1cd31 152 2.22e+01 1cd31 2fha 183 2.33e+01 2fha a.25.1.1 16674 1d2mA 665 2.42e+01 1d2mA c.37.1.19 32417 c.37.1.19 32418 1ub9A 100 2.50e+01 a.4.5.28 -231 1ujkA 147 2.57e+01 a.118.9.2 -1623 1s5lO 246 2.58e+01 1jm0A 50 2.63e+01 k.8.1.1 66870 1pyfA 312 2.65e+01 c.1.7.1 -5251 1ojqA 212 2.66e+01 d.166.1.1 -11568 1hg4A 279 2.67e+01 1lbd a.123.1.1 19333 1s72P 149 2.69e+01 1w2wA 211 2.71e+01 1jg8A 347 2.79e+01 1jg8A c.67.1.1 62946 1d2zB 153 2.86e+01 1d2zB a.77.1.2 18439 1m6sA 347 2.87e+01 c.67.1.1 78701 1tml 286 2.89e+01 1tml c.6.1.1 30656 1dkgA 197 3.09e+01 1dkgA b.73.1.1 27812 h.1.9.1 45626 1i3jA 116 3.12e+01 1i3jA e.30.1.1 61594 1fjgT 106 3.13e+01 1fjfT a.7.6.1 16338 1lnwA 147 3.15e+01 a.4.5.28 78104 1f6bA 198 3.18e+01 c.37.1.8 64986 1qmpA 130 3.22e+01 1dz3A c.23.1.1 31106 1vdeA 454 3.26e+01 1vdeA b.86.1.2 28378 d.95.2.2 40581 d.95.2.2 40582 1qs0A 407 3.31e+01 1qs0A c.36.1.11 31829 1kxpD 458 3.38e+01 a.126.1.1 73160 a.126.1.1 73161 a.126.1.1 73162 1iwhA 141 3.38e+01 a.1.1.2 76882 1k7wA 468 3.56e+01 a.127.1.1 72130 1qhdA 398 3.56e+01 1qhdA a.115.1.2 63324 b.19.1.1 63325 1in4A 334 3.63e+01 1hqcA a.4.5.11 62597 c.37.1.20 62598 1eijA 80 3.74e+01 1eijA a.5.6.1 16298 1li5A 461 3.76e+01 a.27.1.1 73912 c.26.1.1 73913 1i4mA 108 3.77e+01 d.6.1.1 66025 1wdgA 94 3.82e+01