# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ihgA 370 3.15e-01 2cpl a.118.8.1 62380 b.62.1.1 62381 1t7pA 698 5.88e-01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1flcB 175 1.13e+00 1flcB h.3.1.1 45716 1l8nA 679 1.92e+00 c.1.8.10 84564 d.92.2.2 84565 1eg5A 384 2.13e+00 1ecxA c.67.1.3 34429 1miwA 404 2.54e+00 a.173.1.1 79162 d.218.1.4 79163 1h5wA 309 3.03e+00 e.27.1.1 65635 1avqA 228 3.32e+00 1avqA c.52.1.13 33326 1ijgA 309 3.36e+00 1fouA e.27.1.1 62493 1in6A 334 4.53e+00 1hqcA a.4.5.11 62601 c.37.1.20 62602 5csmA 256 5.39e+00 5csmA a.130.1.2 19494 1furA 467 5.47e+00 1furA a.127.1.1 19403 1uhnA 189 5.54e+00 a.39.1.5 -853 1q4mA 221 5.83e+00 unknown_sccs -1910 1f7uA 607 5.94e+00 1bs2A a.27.1.1 59673 c.26.1.1 59674 d.67.2.1 59675 1lngA 87 6.82e+00 d.201.1.1 74045 1in4A 334 6.97e+00 1hqcA a.4.5.11 62597 c.37.1.20 62598 1ju2A 536 7.32e+00 c.3.1.2 77169 d.16.1.1 77170 1mhqA 148 1.02e+01 a.118.9.2 84973 1pieA 419 1.02e+01 d.14.1.5 -9075 unknown_sccs -10120 1qcwA 410 1.04e+01 1gox c.1.4.1 28622 1bpoA 494 1.05e+01 1bpoA a.118.1.4 19143 b.69.6.1 27670 2myr 501 1.16e+01 1sly 618 1.22e+01 1qsaA a.118.5.1 19184 d.2.1.6 36990 1nrfA 262 1.25e+01 e.3.1.1 -11780 1fnnA 389 1.26e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1pq1A 196 1.29e+01 f.1.4.1 -12055 1qv1A 195 1.31e+01 a.39.1.5 -830 1mr3F 181 1.35e+01 c.37.1.8 79422 3pmgA 561 1.45e+01 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1d8dA 377 1.52e+01 1ft1A a.118.6.1 19185 1t5jA 313 1.58e+01 unknown_sccs -1951 1dxrL 273 1.70e+01 6prcL f.26.1.1 43431 1kbjA 412 1.79e+01 c.1.4.1 72280 1amy 403 1.79e+01 1jdc b.71.1.1 27799 c.1.8.1 28786 1ohuA 175 1.79e+01 f.1.4.1 -12058 1e4mM 501 1.80e+01 1e70M c.1.8.4 59226 1v93A 296 1.84e+01 c.1.23.1 -5654 1qtrA 317 1.84e+01 1qtrA c.69.1.7 34660 1rlr 761 1.85e+01 1rlr a.98.1.1 18753 c.7.1.2 30679 1ub9A 100 1.86e+01 a.4.5.28 -231 1avaA 403 1.92e+01 1jdc b.71.1.1 27797 c.1.8.1 28784 1ua4A 455 2.02e+01 c.72.1.3 -8416 1iqrA 420 2.03e+01 a.99.1.1 66275 c.28.1.1 66276 1h0hA 977 2.03e+01 b.52.2.2 76435 c.81.1.1 76436 1dvpA 220 2.05e+01 1dvpA a.118.9.2 19216 g.50.1.1 45358 1uk5A 111 2.07e+01 a.7.7.1 -395 1jf2A 195 2.11e+01 1ej3A a.39.1.5 62930 1el4A 195 2.16e+01 1ej3A a.39.1.5 59453 1byb 495 2.16e+01 1byb c.1.8.1 28790 1htqA 477 2.18e+01 d.15.9.1 71035 d.128.1.1 71036 1q6cA 495 2.23e+01 c.1.8.1 -5300 1v3hA 495 2.28e+01 1af3 196 2.32e+01 1maz f.1.4.1 43397 1huxA 270 2.38e+01 1huxA c.55.1.5 61278 1ld8A 382 2.47e+01 a.118.6.1 73838 1kyhA 276 2.50e+01 c.72.1.4 73222 1dseA 292 2.52e+01 1ryc a.93.1.1 59130 1cjaA 342 2.56e+01 1cjaA d.144.1.3 41708 1mwwA 128 2.60e+01 unknown_sccs -10451 1kxlA 199 2.60e+01 b.40.4.3 73155 1i1rB 181 2.65e+01 1i1rB a.26.1.1 61548 1qsaA 618 2.71e+01 1qsaA a.118.5.1 19182 d.2.1.6 36988 1hs6A 611 2.71e+01 1hs6A a.118.1.7 61233 b.98.1.1 61234 d.92.1.13 61235 1itcA 516 2.71e+01 b.3.1.1 83705 c.1.8.1 83706 1top 162 2.78e+01 1ncx a.39.1.5 17223 1h6qA 168 2.79e+01 1h6qA b.88.1.2 60692 1o3uA 135 2.80e+01 a.24.16.3 86615 1brwA 433 3.04e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1r3cA 366 3.13e+01 d.144.1.7 -11296 1alu 186 3.17e+01 1alu a.26.1.1 16826 1uhvA 500 3.18e+01 b.71.1.2 -4683 c.1.8.3 -5354 1czaN 917 3.18e+01 1qhaA c.55.1.3 33463 c.55.1.3 33464 c.55.1.3 33465 c.55.1.3 33466 1dqsA 393 3.19e+01 1dqsA e.22.1.1 43347 1ng6A 148 3.20e+01 a.182.1.1 85670 1fiqC 763 3.24e+01 1fiqC d.41.1.1 38588 d.133.1.1 41418 1r9lA 309 3.25e+01 c.94.1.1 -8700 1v02A 565 3.33e+01 1n4qB 377 3.36e+01 a.102.4.3 -1424 1mhyB 395 3.41e+01 1mtyB a.25.1.2 16781 1sglA 209 3.42e+01 1rp4A 389 3.54e+01 1ngkA 128 3.56e+01 a.1.1.1 85673 1kgnA 329 3.71e+01 a.25.1.2 68584 1fiy 883 3.95e+01 1fiy c.1.12.3 29307 3ertA 261 3.99e+01 3erdA a.123.1.1 19292