# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ihgA 370 1.41e-01 2cpl a.118.8.1 62380 b.62.1.1 62381 1uhnA 189 1.90e-01 a.39.1.5 -853 1in6A 334 5.32e-01 1hqcA a.4.5.11 62601 c.37.1.20 62602 1in4A 334 6.42e-01 1hqcA a.4.5.11 62597 c.37.1.20 62598 1t7pA 698 9.89e-01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1q4mA 221 1.63e+00 unknown_sccs -1910 1h0hA 977 1.76e+00 b.52.2.2 76435 c.81.1.1 76436 1dxrL 273 1.77e+00 6prcL f.26.1.1 43431 1f7uA 607 2.37e+00 1bs2A a.27.1.1 59673 c.26.1.1 59674 d.67.2.1 59675 1kyhA 276 2.39e+00 c.72.1.4 73222 1lngA 87 2.75e+00 d.201.1.1 74045 1dvpA 220 2.82e+00 1dvpA a.118.9.2 19216 g.50.1.1 45358 1alu 186 2.89e+00 1alu a.26.1.1 16826 1k8tA 510 3.58e+00 e.41.1.1 68316 1mr3F 181 3.81e+00 c.37.1.8 79422 1flcB 175 4.23e+00 1flcB h.3.1.1 45716 1pq1A 196 4.85e+00 f.1.4.1 -12055 1qv1A 195 5.10e+00 a.39.1.5 -830 1eg5A 384 5.13e+00 1ecxA c.67.1.3 34429 1l8nA 679 5.32e+00 c.1.8.10 84564 d.92.2.2 84565 1n4qB 377 5.35e+00 a.102.4.3 -1424 1ca1 370 5.52e+00 1ca1 a.124.1.1 19340 b.12.1.3 23648 1miwA 404 5.62e+00 a.173.1.1 79162 d.218.1.4 79163 1e43A 483 5.70e+00 1bli b.71.1.1 59217 c.1.8.1 59218 1ufbA 127 6.25e+00 a.24.16.3 -635 1pieA 419 6.57e+00 d.14.1.5 -9075 unknown_sccs -10120 1ua4A 455 7.43e+00 c.72.1.3 -8416 1ngkA 128 8.23e+00 a.1.1.1 85673 1ks8A 433 9.19e+00 a.102.1.2 77519 5csmA 256 9.47e+00 5csmA a.130.1.2 19494 1nrfA 262 9.68e+00 e.3.1.1 -11780 1jwgA 147 9.68e+00 a.118.9.2 71911 1ohuA 175 9.70e+00 f.1.4.1 -12058 1ujkA 147 9.74e+00 a.118.9.2 -1623 1mhqA 148 9.76e+00 a.118.9.2 84973 1ni3A 392 1.11e+01 c.37.1.8 80531 d.15.10.2 80532 1fjgB 256 1.22e+01 1fjfB c.23.15.1 31400 1ng6A 148 1.23e+01 a.182.1.1 85670 1q15A 503 1.25e+01 c.26.2.1 -6625 d.153.1.1 -11400 1i1rB 181 1.27e+01 1i1rB a.26.1.1 61548 1top 162 1.38e+01 1ncx a.39.1.5 17223 1fnnA 389 1.42e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1d8dA 377 1.45e+01 1ft1A a.118.6.1 19185 1aj8A 371 1.51e+01 1aj8A a.103.1.1 18900 1kxlA 199 1.51e+01 b.40.4.3 73155 1brwA 433 1.52e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1kgnA 329 1.52e+01 a.25.1.2 68584 1r9lA 309 1.57e+01 c.94.1.1 -8700 1p0iA 529 1.58e+01 c.69.1.1 -8291 1iejA 332 1.59e+01 1nnt c.94.1.2 62328 1el4A 195 1.68e+01 1ej3A a.39.1.5 59453 1o3uA 135 1.68e+01 a.24.16.3 86615 1rqjA 299 1.79e+01 a.128.1.1 -1774 1q1aA 289 1.82e+01 c.31.1.5 -6781 1cg5A 141 1.85e+01 1abwA a.1.1.2 15406 1qcwA 410 1.87e+01 1gox c.1.4.1 28622 1cjaA 342 1.87e+01 1cjaA d.144.1.3 41708 1h5wA 309 1.97e+01 e.27.1.1 65635 1qsdA 106 1.98e+01 1qsdA a.7.5.1 16335 1s5lA 344 2.04e+01 2myr 501 2.07e+01 1lshA 1056 2.23e+01 a.118.4.1 74242 f.7.1.1 74243 f.7.1.1 74244 1khdA 345 2.29e+01 a.46.2.1 77400 c.27.1.1 77401 1ub9A 100 2.30e+01 a.4.5.28 -231 1csh 435 2.32e+01 1csh a.103.1.1 18880 1uocA 289 2.34e+01 unknown_sccs -7671 1n7oA 721 2.34e+01 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 1czaN 917 2.35e+01 1qhaA c.55.1.3 33463 c.55.1.3 33464 c.55.1.3 33465 c.55.1.3 33466 1qtrA 317 2.35e+01 1qtrA c.69.1.7 34660 5pal 109 2.35e+01 1a75A a.39.1.4 17215 1furA 467 2.39e+01 1furA a.127.1.1 19403 1amy 403 2.44e+01 1jdc b.71.1.1 27799 c.1.8.1 28786 1avaA 403 2.45e+01 1jdc b.71.1.1 27797 c.1.8.1 28784 1iqqA 200 2.45e+01 d.124.1.1 66274 1ux5A 411 2.50e+01 unknown_sccs -1768 1htqA 477 2.51e+01 d.15.9.1 71035 d.128.1.1 71036 1eluA 390 2.57e+01 1elqA c.67.1.3 34434 1elqA 390 2.59e+01 1elqA c.67.1.3 34436 1v93A 296 2.65e+01 c.1.23.1 -5654 1iqvA 218 2.72e+01 1rss a.75.1.1 62661 1li5A 461 2.73e+01 a.27.1.1 73912 c.26.1.1 73913 1llfA 534 2.73e+01 c.69.1.17 78094 1kbjA 412 2.74e+01 c.1.4.1 72280 1rzhL 281 2.75e+01 f.26.1.1 -12215 1c4xA 285 2.79e+01 1c4xA c.69.1.10 34684 1fobA 334 2.81e+01 c.1.8.3 83255 1io0A 185 2.83e+01 c.10.1.1 76753 1jf2A 195 2.96e+01 1ej3A a.39.1.5 62930 1rx0A 393 2.98e+01 a.29.3.1 -742 e.6.1.1 -11858 1fiy 883 2.99e+01 1fiy c.1.12.3 29307 1byb 495 3.01e+01 1byb c.1.8.1 28790 1nhyA 219 3.04e+01 a.45.1.1 80520 c.47.1.5 80521 1ld8A 382 3.04e+01 a.118.6.1 73838 1mhyB 395 3.07e+01 1mtyB a.25.1.2 16781 1pyfA 312 3.07e+01 c.1.7.1 -5251 1nogA 177 3.08e+01 a.25.2.2 85923 2bidA 197 3.20e+01 2bidA f.1.4.1 43398 1ithA 141 3.25e+01 1ithA a.1.1.2 15623 1iqrA 420 3.35e+01 a.99.1.1 66275 c.28.1.1 66276 1l6rA 227 3.36e+01 c.108.1.10 77768 1mg7A 417 3.38e+01 d.14.1.6 84954 d.58.26.6 84955 1rwyA 109 3.39e+01 a.39.1.4 -825 1v02A 565 3.39e+01 1evsA 187 3.41e+01 1evsA a.26.1.1 16845 1v3hA 495 3.56e+01 1rfmA 344 3.58e+01 c.122.1.1 -8032 1c7qA 445 3.59e+01 2pgi c.80.1.2 35307 1oj6A 151 3.64e+01 a.1.1.2 -85 1uhvA 500 3.66e+01 b.71.1.2 -4683 c.1.8.3 -5354 1ji8A 111 3.67e+01 d.203.1.1 66733 1rm8A 169 3.69e+01 d.92.1.11 -10584 1qqqA 264 3.69e+01 1bkpA d.117.1.1 40931 1evfA 264 3.70e+01 1bkpA d.117.1.1 40932 1hwxA 501 3.70e+01 1hwyA c.2.1.7 30250 c.58.1.1 33898 1fjgT 106 3.70e+01 1fjfT a.7.6.1 16338 1fqiA 147 3.93e+01 1agrE a.91.1.1 18542 1rktA 205 3.97e+01 a.4.1.9 -210 a.121.1.1 -1663 1q6cA 495 3.98e+01 c.1.8.1 -5300