# List of top-scoring protein chains for t04-100-30-bys hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1flcB 175 9.80e-01 1flcB h.3.1.1 45716 1ks8A 433 1.28e+00 a.102.1.2 77519 1vd5A 377 1.49e+00 1ihgA 370 1.70e+00 2cpl a.118.8.1 62380 b.62.1.1 62381 1dvpA 220 2.18e+00 1dvpA a.118.9.2 19216 g.50.1.1 45358 1mr3F 181 2.46e+00 c.37.1.8 79422 1avqA 228 2.63e+00 1avqA c.52.1.13 33326 1uhnA 189 2.63e+00 a.39.1.5 -853 1t7pA 698 2.91e+00 1t7pA c.55.3.5 33712 e.8.1.1 43005 1ng6A 148 3.07e+00 a.182.1.1 85670 1in6A 334 3.88e+00 1hqcA a.4.5.11 62601 c.37.1.20 62602 1aj8A 371 4.02e+00 1aj8A a.103.1.1 18900 1pq1A 196 4.12e+00 f.1.4.1 -12055 1sly 618 4.15e+00 1qsaA a.118.5.1 19184 d.2.1.6 36990 1kgnA 329 4.66e+00 a.25.1.2 68584 1qsaA 618 4.81e+00 1qsaA a.118.5.1 19182 d.2.1.6 36988 1mhqA 148 5.18e+00 a.118.9.2 84973 1ekeA 230 5.79e+00 1ekeA c.55.3.1 33572 1af3 196 6.23e+00 1maz f.1.4.1 43397 1s5lA 344 6.89e+00 1dxrL 273 7.17e+00 6prcL f.26.1.1 43431 1in4A 334 7.30e+00 1hqcA a.4.5.11 62597 c.37.1.20 62598 1pieA 419 7.77e+00 d.14.1.5 -9075 unknown_sccs -10120 1ohuA 175 7.90e+00 f.1.4.1 -12058 1k8tA 510 7.95e+00 e.41.1.1 68316 1eqfA 280 9.06e+00 1eqfA a.29.2.1 16972 a.29.2.1 16973 2a0b 125 9.63e+00 2a0b a.24.10.1 16630 1m48A 133 1.12e+01 a.26.1.2 74443 1ua4A 455 1.21e+01 c.72.1.3 -8416 1top 162 1.30e+01 1ncx a.39.1.5 17223 1b5l 172 1.35e+01 1b5l a.26.1.3 16900 1d8dA 377 1.37e+01 1ft1A a.118.6.1 19185 1grj 158 1.40e+01 1grj a.2.1.1 15691 d.26.1.2 38433 2tct 207 1.41e+01 2tct a.4.1.9 16063 a.121.1.1 19240 1qcwA 410 1.44e+01 1gox c.1.4.1 28622 1ls6A 295 1.45e+01 c.37.1.5 -7026 1l8nA 679 1.45e+01 c.1.8.10 84564 d.92.2.2 84565 1pbwA 216 1.61e+01 1pbwA a.116.1.1 19103 1f7uA 607 1.63e+01 1bs2A a.27.1.1 59673 c.26.1.1 59674 d.67.2.1 59675 1maz 221 1.63e+01 1maz f.1.4.1 43393 1rdr 461 1.64e+01 1rdr e.8.1.4 43116 1qoyA 318 1.70e+01 1qoyA h.4.4.1 45788 1ufbA 127 1.77e+01 a.24.16.3 -635 1ji8A 111 1.77e+01 d.203.1.1 66733 1h6kA 757 1.79e+01 unknown_sccs 60675 unknown_sccs 60676 unknown_sccs 60677 1kl9A 182 1.84e+01 b.40.4.5 72681 1j99A 293 2.04e+01 c.37.1.5 71618 1lngA 87 2.05e+01 d.201.1.1 74045 1w2wA 211 2.12e+01 3ertA 261 2.22e+01 3erdA a.123.1.1 19292 1rj9A 304 2.24e+01 a.24.13.1 -631 c.37.1.10 -7129 1nd7A 374 2.24e+01 d.148.1.1 -11394 1li5A 461 2.36e+01 a.27.1.1 73912 c.26.1.1 73913 1t5jA 313 2.40e+01 unknown_sccs -1951 1hs6A 611 2.42e+01 1hs6A a.118.1.7 61233 b.98.1.1 61234 d.92.1.13 61235 1rp4A 389 2.55e+01 1gw5A 621 2.56e+01 a.118.1.10 70629 1htjF 210 2.74e+01 1htjF a.91.1.1 61254 1furA 467 2.74e+01 1furA a.127.1.1 19403 1vk3A 615 2.92e+01 d.79.4.1 -10416 d.79.4.1 -10417 d.139.1.1 -11154 d.139.1.1 -11155 1r9dA 787 2.93e+01 1oxjA 173 3.02e+01 a.60.1.2 87517 a.118.1.13 87518 1f35A 162 3.04e+01 1f35A b.94.1.1 59628 1evsA 187 3.14e+01 1evsA a.26.1.1 16845 1g61A 228 3.15e+01 1g61A d.126.1.1 41126 1o0sA 605 3.20e+01 c.2.1.7 86540 c.58.1.3 86541 1ojhA 65 3.27e+01 1mlwA 301 3.28e+01 d.178.1.1 79289 1f3aA 222 3.28e+01 1pgtA a.45.1.1 17701 c.47.1.5 32995 1sqsA 242 3.34e+01 unknown_sccs -6433 1dz3A 130 3.38e+01 1dz3A c.23.1.1 31105 1nrfA 262 3.44e+01 e.3.1.1 -11780 1n13B 113 3.54e+01 1f0jA 377 3.56e+01 1f0jA a.125.1.1 19346 1rktA 205 3.62e+01 a.4.1.9 -210 a.121.1.1 -1663 1e8aA 91 3.63e+01 1b4cA a.39.1.2 17188 1h72C 296 3.65e+01 d.14.1.5 60712 d.58.26.1 60713 1hfeL 421 3.66e+01 1fehA c.96.1.1 36018 d.58.1.5 39001 1qqqA 264 3.67e+01 1bkpA d.117.1.1 40931 1hx1B 114 3.69e+01 1hx1B a.7.7.1 61350 1j55A 95 3.74e+01 a.39.1.2 77078 1aua 296 3.79e+01 1aua a.5.3.1 16290 c.13.1.1 30882 3gcb 470 3.79e+01 3gcb d.3.1.1 37032 1rzhL 281 3.81e+01 f.26.1.1 -12215 1cjaA 342 3.83e+01 1cjaA d.144.1.3 41708 1evfA 264 3.87e+01 1bkpA d.117.1.1 40932 1o3uA 135 3.89e+01 a.24.16.3 86615 1eg5A 384 3.94e+01 1ecxA c.67.1.3 34429 1q44A 326 3.95e+01 c.37.1.5 -7037 1b3uA 588 3.95e+01 1b3uA a.118.1.2 19135