# List of top-scoring protein chains for t04-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ihgA 370 4.62e-01 2cpl a.118.8.1 62380 b.62.1.1 62381 1flcB 175 5.61e-01 1flcB h.3.1.1 45716 1t7pA 698 1.48e+00 1t7pA c.55.3.5 33712 e.8.1.1 43005 1mr3F 181 3.15e+00 c.37.1.8 79422 1pq1A 196 3.42e+00 f.1.4.1 -12055 1af3 196 3.49e+00 1maz f.1.4.1 43397 1ua4A 455 3.89e+00 c.72.1.3 -8416 1ohuA 175 4.05e+00 f.1.4.1 -12058 1fobA 334 4.47e+00 c.1.8.3 83255 1ekeA 230 4.60e+00 1ekeA c.55.3.1 33572 1kgnA 329 4.84e+00 a.25.1.2 68584 1dvpA 220 5.21e+00 1dvpA a.118.9.2 19216 g.50.1.1 45358 1o0sA 605 5.93e+00 c.2.1.7 86540 c.58.1.3 86541 1furA 467 6.09e+00 1furA a.127.1.1 19403 1uhnA 189 6.47e+00 a.39.1.5 -853 1in6A 334 6.54e+00 1hqcA a.4.5.11 62601 c.37.1.20 62602 3pmgA 561 7.27e+00 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1rfmA 344 7.43e+00 c.122.1.1 -8032 1gcb 454 7.44e+00 3gcb d.3.1.1 37034 1j55A 95 8.02e+00 a.39.1.2 77078 3gcb 470 8.28e+00 3gcb d.3.1.1 37032 1maz 221 8.30e+00 1maz f.1.4.1 43393 1r9lA 309 8.70e+00 c.94.1.1 -8700 1m48A 133 8.81e+00 a.26.1.2 74443 1lngA 87 9.10e+00 d.201.1.1 74045 1ufbA 127 9.18e+00 a.24.16.3 -635 1l8nA 679 9.55e+00 c.1.8.10 84564 d.92.2.2 84565 1m4rA 151 9.83e+00 a.26.1.3 84799 1dxrL 273 1.17e+01 6prcL f.26.1.1 43431 1s5lA 344 1.26e+01 1f3aA 222 1.34e+01 1pgtA a.45.1.1 17701 c.47.1.5 32995 1brwA 433 1.41e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1q4mA 221 1.43e+01 unknown_sccs -1910 1qv1A 195 1.44e+01 a.39.1.5 -830 1eg5A 384 1.47e+01 1ecxA c.67.1.3 34429 1lox 662 1.49e+01 1lox a.119.1.2 19238 b.12.1.1 23638 1rdr 461 1.55e+01 1rdr e.8.1.4 43116 1pk5A 248 1.57e+01 a.123.1.1 88139 1nd7A 374 1.61e+01 d.148.1.1 -11394 1ji8A 111 1.63e+01 d.203.1.1 66733 1q15A 503 1.69e+01 c.26.2.1 -6625 d.153.1.1 -11400 1in4A 334 1.81e+01 1hqcA a.4.5.11 62597 c.37.1.20 62598 1csh 435 1.83e+01 1csh a.103.1.1 18880 1ho8A 480 1.84e+01 1ho8A a.118.1.9 61107 1q44A 326 1.95e+01 c.37.1.5 -7037 1o3uA 135 1.96e+01 a.24.16.3 86615 1k8tA 510 1.99e+01 e.41.1.1 68316 1top 162 1.99e+01 1ncx a.39.1.5 17223 1pieA 419 2.00e+01 d.14.1.5 -9075 unknown_sccs -10120 1rzhL 281 2.01e+01 f.26.1.1 -12215 1mhyD 521 2.08e+01 1mhyD a.25.1.2 16780 1ng6A 148 2.11e+01 a.182.1.1 85670 1hs6A 611 2.24e+01 1hs6A a.118.1.7 61233 b.98.1.1 61234 d.92.1.13 61235 1jk3A 158 2.24e+01 d.92.1.11 66790 1rx0A 393 2.34e+01 a.29.3.1 -742 e.6.1.1 -11858 1foeA 377 2.39e+01 1foeA a.87.1.1 18517 b.55.1.1 26969 1cjaA 342 2.41e+01 1cjaA d.144.1.3 41708 1gypA 358 2.46e+01 1dssG c.2.1.3 30004 d.81.1.1 39919 1kbjA 412 2.49e+01 c.1.4.1 72280 1cuk 203 2.62e+01 1hjp a.5.1.1 16273 a.60.2.1 17946 b.40.4.2 25265 1qoyA 318 2.69e+01 1qoyA h.4.4.1 45788 1miwA 404 2.76e+01 a.173.1.1 79162 d.218.1.4 79163 1a8h 500 2.77e+01 1a8h a.27.1.1 16922 c.26.1.1 31589 1aj8A 371 2.77e+01 1aj8A a.103.1.1 18900 1rp4A 389 2.77e+01 1rj9A 304 2.84e+01 a.24.13.1 -631 c.37.1.10 -7129 1j99A 293 2.85e+01 c.37.1.5 71618 1mbyA 88 2.93e+01 d.223.1.1 78931 1kl9A 182 3.00e+01 b.40.4.5 72681 1grj 158 3.01e+01 1grj a.2.1.1 15691 d.26.1.2 38433 1qsaA 618 3.09e+01 1qsaA a.118.5.1 19182 d.2.1.6 36988 1ks8A 433 3.11e+01 a.102.1.2 77519 1i3jA 116 3.17e+01 1i3jA e.30.1.1 61594 1iq8A 582 3.20e+01 b.122.1.1 83074 c.1.20.1 71270 d.17.6.1 83075 1ass 159 3.21e+01 1a6dA c.8.5.2 30818 1e3aA 260 3.25e+01 1ajqA d.153.1.2 41838 1qcwA 410 3.27e+01 1gox c.1.4.1 28622 1alu 186 3.33e+01 1alu a.26.1.1 16826 1avqA 228 3.40e+01 1avqA c.52.1.13 33326 1hu3A 260 3.48e+01 1hu3A unknown_sccs 19137 1r2fA 319 3.54e+01 1r2fA a.25.1.2 16800 1jdrA 294 3.55e+01 1ryc a.93.1.1 62908 1byb 495 3.60e+01 1byb c.1.8.1 28790 1fx8A 281 3.65e+01 f.19.1.1 43651 1ca1 370 3.69e+01 1ca1 a.124.1.1 19340 b.12.1.3 23648 1uk5A 111 3.70e+01 a.7.7.1 -395 1mmq 170 3.77e+01 1hfc d.92.1.11 40396 1ic2A 81 3.79e+01 h.1.5.1 62247 1h6kA 757 3.82e+01 unknown_sccs 60675 unknown_sccs 60676 unknown_sccs 60677 1smd 496 3.87e+01 1smd b.71.1.1 27768 c.1.8.1 28755 1pujA 282 3.88e+01 c.37.1.8 88294 1ux5A 411 3.92e+01 unknown_sccs -1768