PFRMAT RR
TARGET T0238
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
MKKAKLNIIKINIIAMILTLICTSCAPFSKIDPKANANTKPKKITNPGEN
TQNFEDKSGDLSTSDEKIMETIASELKAIGKELEDQKKEENIQIAKIAKE
KFDFLSTFKVGPYDLIDEDIQMKIKRTLYSSLDYKKENIEKLKEILEILK
KNSEHYNIIGRLIYHISWGIQFQIEQNLELIQNGVENLSQEESKSLLMQI
KSNLEIKQRLKKTLNETLKVYNQNTQDNEKILAEHFNKYYKDFDTLKPAF
Y
154 250 0 8 0.6868
154 239 0 8 0.47685
77 239 0 8 0.3604
239 250 0 8 0.3026
132 142 0 8 0.27285
156 188 0 8 0.2618
20 221 0 8 0.2142
163 240 0 8 0.20655
172 239 0 8 0.20315
156 177 0 8 0.20315
165 177 0 8 0.1972
111 200 0 8 0.1972
38 115 0 8 0.1938
33 45 0 8 0.1853
END