CreatePredAlphaCost pred_alpha2k alpha11 T0237.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0237.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 5 dry6.5 6 dry8 5 dry12 2 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 20  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 30 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 4 \
	hbond_geom_beta_pair 10

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

include T0237.t2k.dssp-ehl2.constraints
include T0237.t2k.dssp-ebghstl.constraints
include T0237.t2k.stride-ebghtl.constraints
include T0237.t2k.str2.constraints
include T0237.t2k.alpha.constraints
include T0237.t2k.bys.constraints

include T0237.t04.dssp-ehl2.constraints
include T0237.t04.dssp-ebghstl.constraints
include T0237.t04.stride-ebghtl.constraints
include T0237.t04.str2.constraints
include T0237.t04.alpha.constraints
include T0237.t04.bys.constraints


# from original papers on 1hnf 

SSBond	C150	C120	1.0
SSBond	C178	C166	1.0
SSBond	C205	C52	1.0
SSBond	C312	C240	1.0
SSBond	C321	C223	1.0
SSbond	C346	C402	1.0
SSBond	C390	C407	1.0
SSBond	C392	C409	1.0