CreatePredAlphaCost pred_alpha2k alpha11 T0238.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0238.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 20 near_backbone 5 way_back 5 dry5 20 dry6.5 30 dry8 15 dry12 5 \
	phobic_fit 4 \
	sidechain 1 \
	bystroff 5 \
	soft_clashes 25  backbone_clashes 2 \
	break 60  \
	pred_alpha2k 1 \
	pred_alpha04 6 \
	known_ssbond 1 \
	hbond_geom 1 \
	hbond_geom_backbone 2 \
	hbond_geom_beta 4 \
	hbond_geom_beta_pair 15



// Add the following for extra-cellular proteins:
#	maybe_ssbond 0.5


SSBond	C150	C120	1.0
SSBond	C178	C166	1.0
SSBond	C205	C52	1.0
SSBond	C312	C240	1.0
SSBond	C321	C223	1.0
SSbond	C346	C402	1.0
SSBond	C390	C407	1.0
SSBond	C392	C409	1.0