# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hn6A 110 5.87e-15 g.61.1.1 76721 1tocR 120 5.67e-01 1tocR g.8.1.2 44558 g.8.1.2 44559 1iqqA 200 3.31e+00 d.124.1.1 66274 1g8jB 133 5.18e+00 1g8jB b.33.1.1 24439 1e32A 458 6.54e+00 1e32A b.52.2.3 59183 c.37.1.20 59184 d.31.1.1 59185 1h9oA 112 7.50e+00 1qadA d.93.1.1 60837 1g8kB 133 9.00e+00 1g8jB b.33.1.1 24435 1jb7B 260 1.03e+01 1otcB b.40.4.3 62839 1l8fA 207 1.07e+01 b.52.1.1 84537 1kthA 58 1.23e+01 g.8.1.1 68863 2knt 58 1.23e+01 1bpi g.8.1.1 44537 1knt 58 1.23e+01 1bpi g.8.1.1 44538 1m6bA 621 1.24e+01 c.10.2.5 74521 c.10.2.5 74522 g.3.9.1 74523 g.3.9.1 74524 1a49A 530 1.31e+01 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1jceA 344 1.41e+01 c.55.1.1 62876 c.55.1.1 62877 1j58A 385 1.46e+01 b.82.1.2 71531 1jcfA 344 1.54e+01 c.55.1.1 62878 c.55.1.1 62879 1cx8B 639 1.69e+01 1cx8B a.48.2.1 17783 c.8.4.1 30764 c.56.5.5 33852 1ocxA 182 1.77e+01 b.81.1.3 86814 1iso 416 1.80e+01 1iso c.77.1.1 35065 1dtx 59 1.95e+01 1bpi g.8.1.1 44551 1i1iP 681 1.97e+01 1i1iP d.92.1.5 40297 1uocA 289 2.02e+01 unknown_sccs -7671 1n67A 359 2.07e+01 b.2.3.4 85354 b.2.3.4 85355 1dceA 567 2.17e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1shp 55 2.17e+01 1bpi g.8.1.1 44553 1b91A 118 2.39e+01 1b91A 1cx8A 639 2.42e+01 1cx8B a.48.2.1 17782 c.8.4.1 30763 c.56.5.5 33851 1fkf 107 2.48e+01 1fkj d.26.1.1 38386 1fkj 107 2.48e+01 1fkj d.26.1.1 38384 1bhtA 176 2.62e+01 1bhtA g.10.1.1 44603 g.14.1.1 44663 1bxnA 485 2.70e+01 1burA c.1.14.1 29376 d.58.9.1 39282 1lvk 762 2.76e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1ig3A 263 2.84e+01 1ig3A b.82.6.1 62358 c.100.1.1 62359 1pkn 530 2.87e+01 1a49A b.58.1.1 27042 c.1.12.1 29271 c.49.1.1 33125 1gmnA 183 2.97e+01 g.10.1.1 65315 g.14.1.1 65316 1bkf 107 2.97e+01 1fkj d.26.1.1 38382 1dyr 206 3.03e+01 1aoeA c.71.1.1 34916 1m7xA 617 3.05e+01 b.1.18.2 78749 b.71.1.1 78750 c.1.8.1 78751 1fkd 107 3.13e+01 1fkj d.26.1.1 38383 1skyB 502 3.14e+01 1skyB a.69.1.1 18313 b.49.1.1 26478 c.37.1.11 32358 1o5uA 101 3.65e+01 b.82.1.8 -4845 1n1mA 728 3.81e+01 b.70.3.1 79815 c.69.1.24 79816 1de4C 640 3.82e+01 1cx8B a.48.2.1 17779 c.8.4.1 30760 c.56.5.5 33848 1i50B 1224 3.89e+01 e.29.1.1 61755