# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hn6A 110 3.22e-16 g.61.1.1 76721 1jb7B 260 3.48e-01 1otcB b.40.4.3 62839 1tocR 120 1.19e+00 1tocR g.8.1.2 44558 g.8.1.2 44559 1kthA 58 1.32e+00 g.8.1.1 68863 2knt 58 1.32e+00 1bpi g.8.1.1 44537 1knt 58 1.32e+00 1bpi g.8.1.1 44538 1dfaA 454 2.24e+00 1vdeA b.86.1.2 28375 d.95.2.2 40575 d.95.2.2 40576 1n4kA 381 2.57e+00 unknown_sccs 79992 b.42.6.1 79993 1otcB 260 2.97e+00 1otcB b.40.4.3 25310 1g8jB 133 3.53e+00 1g8jB b.33.1.1 24439 1g8kB 133 3.69e+00 1g8jB b.33.1.1 24435 1f39A 101 4.52e+00 1umuA b.87.1.1 28386 1shp 55 4.99e+00 1bpi g.8.1.1 44553 1a49A 530 5.07e+00 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1m7xA 617 5.32e+00 b.1.18.2 78749 b.71.1.1 78750 c.1.8.1 78751 1dtx 59 5.42e+00 1bpi g.8.1.1 44551 1b91A 118 5.54e+00 1b91A 1bkf 107 5.55e+00 1fkj d.26.1.1 38382 1h9oA 112 5.82e+00 1qadA d.93.1.1 60837 1gmnA 183 6.46e+00 g.10.1.1 65315 g.14.1.1 65316 1fkf 107 6.69e+00 1fkj d.26.1.1 38386 1fkj 107 6.69e+00 1fkj d.26.1.1 38384 1l8fA 207 7.07e+00 b.52.1.1 84537 1bhtA 176 7.14e+00 1bhtA g.10.1.1 44603 g.14.1.1 44663 1skyB 502 8.63e+00 1skyB a.69.1.1 18313 b.49.1.1 26478 c.37.1.11 32358 1h8eA 510 9.87e+00 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 1cx8B 639 9.90e+00 1cx8B a.48.2.1 17783 c.8.4.1 30764 c.56.5.5 33852 1jm4B 118 1.01e+01 a.29.2.1 71746 1qadA 111 1.09e+01 1qadA d.93.1.1 40498 1a65A 504 1.17e+01 1a65A b.6.1.3 23148 b.6.1.3 23149 b.6.1.3 23150 1cx8A 639 1.19e+01 1cx8B a.48.2.1 17782 c.8.4.1 30763 c.56.5.5 33851 1iqqA 200 1.21e+01 d.124.1.1 66274 1hfuA 503 1.22e+01 b.6.1.3 65827 b.6.1.3 65828 b.6.1.3 65829 1b77A 228 1.43e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 1kbqA 273 1.46e+01 c.23.5.3 68391 1bmfA 510 1.46e+01 1skyB a.69.1.1 18281 b.49.1.1 26446 c.37.1.11 32326 1e79A 510 1.53e+01 1skyB a.69.1.1 18269 b.49.1.1 26434 c.37.1.11 32314 1a3z 155 1.57e+01 1rcy b.6.1.1 23019 1g6xA 58 1.70e+01 1bpi g.8.1.1 60320 1o8bA 219 1.70e+01 unknown_sccs 81180 d.58.40.1 81181 1mu5A 471 1.72e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1de4C 640 1.74e+01 1cx8B a.48.2.1 17779 c.8.4.1 30760 c.56.5.5 33848 1agqD 135 1.81e+01 1agqA g.17.1.2 44792 1jj2Y 73 1.85e+01 1ffkW g.41.8.1 63110 1pkn 530 1.93e+01 1a49A b.58.1.1 27042 c.1.12.1 29271 c.49.1.1 33125 1rcy 151 2.02e+01 1rcy b.6.1.1 23018 1bpi 58 2.02e+01 1bpi g.8.1.1 44468 1mspA 126 2.06e+01 1mspA b.1.11.2 22333 1fkd 107 2.10e+01 1fkj d.26.1.1 38383 1j58A 385 2.12e+01 b.82.1.2 71531 1hw5A 210 2.14e+01 2cgpA a.4.5.4 16098 b.82.3.2 28137 1bfi 112 2.18e+01 1qadA d.93.1.1 40499 1e30A 155 2.18e+01 1rcy b.6.1.1 23016 1c7sA 858 2.21e+01 1qba b.1.18.2 21812 b.2.2.3 22408 c.1.8.6 29011 d.92.2.1 40410 1hh1A 143 2.26e+01 1gefA c.52.1.18 61036 1rowA 109 2.26e+01 b.1.11.2 -2851 2cgpA 210 2.30e+01 2cgpA a.4.5.4 16102 b.82.3.2 28141 5pti 58 2.35e+01 1bpi g.8.1.1 44467 1adz 71 2.35e+01 1bpi g.8.1.1 44542 1qba 858 2.37e+01 1qba b.1.18.2 21810 b.2.2.3 22406 c.1.8.6 29009 d.92.2.1 40408 2tgpI 58 2.45e+01 1bpi g.8.1.1 44494 2pspA 106 2.45e+01 2pspA g.16.1.1 44730 g.16.1.1 44731 1o5uA 101 2.46e+01 b.82.1.8 -4845 1e32A 458 2.51e+01 1e32A b.52.2.3 59183 c.37.1.20 59184 d.31.1.1 59185 2hgf 97 2.59e+01 1bhtA g.10.1.1 44607 1dthA 203 2.61e+01 1atlA d.92.1.9 40324 1i50A 1733 2.62e+01 e.29.1.2 61754 1gk8I 140 2.68e+01 d.73.1.1 65242 1grwA 126 2.76e+01 b.1.11.2 70391 3mspA 126 2.78e+01 1mspA b.1.11.2 22343 1snzA 344 2.79e+01 b.30.5.4 -3496 1qrdA 273 2.84e+01 1d4aA c.23.5.3 31217 1vom 762 2.90e+01 1lvk b.34.3.1 24577 c.37.1.9 32174 1olzA 663 2.95e+01 b.1.1.4 -2678 unknown_sccs -4626 unknown_sccs -12590 1lvk 762 2.96e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1ig8A 486 3.12e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1uocA 289 3.15e+01 unknown_sccs -7671 3nodB 423 3.24e+01 1nseA d.174.1.1 42513 1mvlA 209 3.27e+01 c.34.1.1 85146 1miwA 404 3.36e+01 a.173.1.1 79162 d.218.1.4 79163 1qd1A 325 3.39e+01 1qd1A d.58.34.1 39493 d.58.34.1 39494 1cur 155 3.40e+01 1rcy b.6.1.1 23021 1d4aA 273 3.42e+01 1d4aA c.23.5.3 31219 1l8rA 101 3.44e+01 a.6.1.4 73700 1lrwA 600 3.61e+01 b.70.1.1 -4629 1lv3A 68 3.73e+01 g.39.1.9 78231 1oz7A 131 3.73e+01 d.169.1.1 -11622 1tubA 440 3.85e+01 1tubA c.32.1.1 31751 d.79.2.1 39803 1tuhA 156 3.94e+01 1hbq 183 3.95e+01 1aqb b.60.1.1 27078