# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hn6A 110 1.00e-23 g.61.1.1 76721 1g8iA 190 1.12e+00 1rec a.39.1.5 60363 1ajyA 71 1.84e+00 1zmeC g.38.1.1 45083 h.1.3.1 45516 1kt6A 183 1.90e+00 b.60.1.1 84466 1zmeC 70 2.16e+00 1zmeC g.38.1.1 45081 h.1.3.1 45514 1dyr 206 2.38e+00 1aoeA c.71.1.1 34916 1hbq 183 2.66e+00 1aqb b.60.1.1 27078 1enwA 114 3.06e+00 1enwA a.5.4.1 16291 1hbp 183 3.20e+00 1aqb b.60.1.1 27079 1n8yC 608 3.54e+00 c.10.2.5 80314 c.10.2.5 80315 g.3.9.1 80316 g.3.9.1 80317 1aqb 183 3.78e+00 1aqb b.60.1.1 27084 1jv2A 957 4.69e+00 b.1.15.1 67334 b.1.15.1 67335 b.1.15.1 67336 b.69.8.1 67337 1g8eA 116 4.75e+00 1g8eA a.145.1.1 60346 1l8rA 101 6.10e+00 a.6.1.4 73700 1fmjA 351 8.06e+00 c.37.1.5 59879 1s6cA 183 8.69e+00 a.39.1.5 -858 1hwtC 81 9.60e+00 1hwtC g.38.1.1 45085 h.1.3.1 45518 1bhtA 176 1.06e+01 1bhtA g.10.1.1 44603 g.14.1.1 44663 1octC 156 1.19e+01 1au7A a.4.1.1 15991 a.35.1.1 17017 1i50B 1224 1.20e+01 e.29.1.1 61755 1adz 71 1.28e+01 1bpi g.8.1.1 44542 1i50L 70 1.30e+01 g.41.9.2 61766 1onxA 390 1.34e+01 b.92.1.7 87176 c.1.9.13 87177 1jf2A 195 1.36e+01 1ej3A a.39.1.5 62930 1jeyB 565 1.36e+01 1jeqB unknown_sccs -4431 unknown_sccs -7995 1mslA 109 1.38e+01 1mslA f.16.1.1 43660 1m6bA 621 1.43e+01 c.10.2.5 74521 c.10.2.5 74522 g.3.9.1 74523 g.3.9.1 74524 1l5pA 93 1.44e+01 d.15.4.1 73598 1jnrB 150 1.50e+01 d.58.1.5 66969 1e0fI 57 1.54e+01 1e0fI g.3.15.2 44377 1izlC 473 1.56e+01 i.5.1.1 76996 1qk7A 32 1.56e+01 1qk7A g.3.6.2 44116 1j5yA 187 1.70e+01 a.4.5.1 71592 d.94.2.1 71593 1onwA 390 1.74e+01 b.92.1.7 87172 c.1.9.13 87173 1rbp 182 1.85e+01 1aqb b.60.1.1 27085 1qbeA 132 1.87e+01 1qbeA d.85.1.1 40138 1f4qA 165 1.90e+01 1alvA a.39.1.8 17360 1e3oC 160 1.97e+01 1au7A a.4.1.1 59197 a.35.1.1 59198 1gzqA 300 1.98e+01 b.1.1.2 70818 d.19.1.1 70819 1byuA 216 2.01e+01 1byuA c.37.1.8 32032 1owfB 94 2.13e+01 a.55.1.1 87488 1jbaA 204 2.21e+01 1rec a.39.1.5 17330 1fu1A 203 2.21e+01 1fu1B b.59.1.1 27076 h.1.11.1 45630 1v54A 514 2.23e+01 f.24.1.1 -12235 2kinB 100 2.31e+01 3kinB 1q0vA 81 2.35e+01 j.105.1.1 -13401 1aorA 605 2.36e+01 1b25A a.110.1.1 19042 d.152.1.1 41794 1h9oA 112 2.43e+01 1qadA d.93.1.1 60837 1knzA 164 2.61e+01 e.34.1.1 68709 1llmC 88 2.65e+01 g.37.1.1 -12707 g.37.1.1 -12708 1nfiC 301 2.68e+01 b.1.18.1 21943 b.2.5.3 22456 1i0uA 82 2.68e+01 1i0uA g.3.11.1 61493 g.3.11.1 61494 1nfiA 301 2.75e+01 1a3qA b.1.18.1 21942 b.2.5.3 22455 1jeqB 565 2.89e+01 1jeqB unknown_sccs -4432 unknown_sccs -7996 1dgrC 178 2.98e+01 1dgwA b.82.1.2 28100 1ihfB 94 3.12e+01 1huuA a.55.1.1 17894 1qu7A 227 3.16e+01 1qu7A h.4.5.1 45789 1fgyA 127 3.24e+01 1faoA b.55.1.1 26976 1bmfG 272 3.24e+01 1e1qG c.49.2.1 33160 1a17 166 3.24e+01 1a17 a.118.8.1 19206 1cewI 108 3.25e+01 1cewI d.17.1.2 37999 1gnf 46 3.30e+01 1gatA g.39.1.1 45107 1dgwA 178 3.42e+01 1dgwA b.82.1.2 28090 1jyoE 105 3.50e+01 d.184.1.2 67487 1cauA 181 3.59e+01 1dgwA b.82.1.2 28102 6prcM 323 3.61e+01 6prcM f.26.1.1 43435 1nbmG 272 3.63e+01 1e1qG c.49.2.1 33161 1ml9A 302 3.65e+01 b.85.7.1 79282 1ezjA 115 3.68e+01 1ezjA h.1.14.1 45638 1fleI 57 3.68e+01 1fleI g.3.14.1 44352 1el4A 195 3.70e+01 1ej3A a.39.1.5 59453 1r4kA 169 3.70e+01 unknown_sccs -3625 1ovxA 67 3.74e+01 unknown_sccs -12752 2fn2 59 3.79e+01 1e8bA g.14.1.2 44668 1qv1A 195 3.90e+01 a.39.1.5 -830 2occA 514 3.98e+01 2occA f.24.1.1 43518