# List of top-scoring protein chains for T0237.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hn6A 110 5.87e-20 g.61.1.1 76721 1iqqA 200 2.02e-01 d.124.1.1 66274 1nr6A 473 6.66e-01 a.104.1.1 -1464 1tocR 120 1.74e+00 1tocR g.8.1.2 44558 g.8.1.2 44559 1n7hA 381 1.78e+00 c.2.1.2 80250 1fxoA 293 3.42e+00 1g0rA c.68.1.6 34524 1olpA 370 3.71e+00 a.124.1.1 -1711 b.12.1.3 -3036 1bez 310 5.00e+00 1b6g c.69.1.8 34666 1kgsA 225 5.37e+00 a.4.6.1 68596 c.23.1.1 68597 1hdeA 310 5.72e+00 1b6g c.69.1.8 34675 1b6g 310 5.77e+00 1b6g c.69.1.8 34661 1e0vA 313 5.77e+00 1taxA c.1.8.3 59149 1ede 310 5.78e+00 1b6g c.69.1.8 34662 1od8A 313 5.82e+00 c.1.8.3 86838 1xas 299 5.94e+00 1taxA c.1.8.3 28891 1xyfA 436 6.07e+00 1taxA b.42.2.1 25577 c.1.8.3 28909 1kkeA 210 6.75e+00 b.21.1.2 68669 b.83.1.2 68670 1uslA 170 7.51e+00 c.121.1.1 -6682 1iv3A 152 8.15e+00 d.79.5.1 76828 1l0aA 192 8.16e+00 b.8.1.1 73389 h.1.2.1 73390 1iv1A 152 8.73e+00 d.79.5.1 76816 1auz 116 8.90e+00 1auz c.13.2.1 30883 1flkA 228 9.23e+00 1d0aB b.8.1.1 23262 h.1.2.1 45469 1n4qB 377 1.06e+01 a.102.4.3 -1424 1d4m3 238 1.20e+01 1aym3 1ll2A 333 1.27e+01 c.68.1.14 74005 1ll0A 339 1.28e+01 c.68.1.14 73995 1jm1A 204 1.46e+01 b.33.1.1 71745 1dceA 567 1.67e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1qqp2 218 1.75e+01 1qqp2 1myr 501 2.06e+01 1e70M c.1.8.4 28925 1fj2A 232 2.13e+01 1auoA c.69.1.14 34720 1nwbA 124 2.50e+01 b.124.1.1 86296 1e4mM 501 2.53e+01 1e70M c.1.8.4 59226 1dwaM 499 2.53e+01 1e70M c.1.8.4 28928 1euhA 475 2.56e+01 1euhA c.82.1.1 35369 1l9xA 315 2.62e+01 c.23.16.1 73762 1jr8A 117 2.77e+01 a.24.15.1 67115 1m56C 266 2.89e+01 f.25.1.1 74474 1oj6A 151 3.06e+01 a.1.1.2 -85 1kkoA 413 3.35e+01 c.1.11.2 68675 d.54.1.1 68676 1qi1A 475 3.44e+01 1euhA c.82.1.1 35381 1n28A 124 3.49e+01 a.133.1.2 -1995 1ahjA 207 3.50e+01 2ahjA d.149.1.1 41774 2ahjA 206 3.58e+01 2ahjA d.149.1.1 41772 1n29A 124 3.64e+01 a.133.1.2 -1997 1kvoA 124 3.64e+01 1poa a.133.1.2 19564 1avbA 226 3.70e+01 1led b.29.1.1 24158 1lkxA 697 3.72e+01 c.37.1.9 73981 1lm6A 215 3.74e+01 d.167.1.1 84628 1k6wA 426 3.77e+01 b.92.1.2 68236 c.1.9.5 68237 1jb9A 316 3.81e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 1vh8A 170 3.90e+01 d.79.5.1 -10379 1jj2Y 73 3.97e+01 1ffkW g.41.8.1 63110 1th8B 116 3.97e+01