# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hn6A 110 2.62e-14 g.61.1.1 76721 1is1A 185 1.52e-01 d.67.3.1 83704 1ewqA 765 2.85e-01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743 1jeyB 565 3.45e-01 1jeqB unknown_sccs -4431 unknown_sccs -7995 1ri5A 298 4.57e-01 unknown_sccs -8063 1js8A 394 7.71e-01 a.86.1.1 67219 b.112.1.1 67220 1k4nA 192 7.74e-01 d.32.1.5 72059 1a49A 530 2.12e+00 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1qhlA 227 2.13e+00 1qhlA c.37.1.12 32382 1eg2A 319 2.16e+00 1eg2A c.66.1.11 34249 1i8nA 126 2.45e+00 1i8nA g.10.1.2 61976 2hgf 97 2.81e+00 1bhtA g.10.1.1 44607 1r0vA 305 3.36e+00 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1sf8A 126 3.54e+00 1jnrB 150 3.64e+00 d.58.1.5 66969 1th8A 145 3.86e+00 1m45A 148 4.38e+00 a.39.1.5 78598 1jenA 267 4.82e+00 1jenA 1pz1A 333 4.90e+00 c.1.7.1 -5255 1n27A 96 5.09e+00 b.34.9.2 -3585 2pii 112 5.21e+00 2pii d.58.5.1 39071 1a48 306 5.36e+00 1a48 d.143.1.1 41590 1g5aA 628 5.39e+00 b.71.1.1 65152 c.1.8.1 65153 1mk0A 97 5.47e+00 d.226.1.1 79216 1aw8B 91 5.65e+00 1aw8B 1s6cA 183 6.01e+00 a.39.1.5 -858 1ed5A 444 6.76e+00 1nseA d.174.1.1 42530 1d1vA 444 6.93e+00 1nseA d.174.1.1 59101 1fxlA 167 7.02e+00 1b7fA d.58.7.1 39183 d.58.7.1 39184 1jb7B 260 7.19e+00 1otcB b.40.4.3 62839 1rmd 116 7.24e+00 1rmd g.37.1.1 45025 g.44.1.1 45322 1iqqA 200 7.75e+00 d.124.1.1 66274 1eh6A 207 8.66e+00 1sfe a.4.2.1 16076 c.55.7.1 33751 1mixA 206 9.22e+00 a.11.2.1 79166 b.55.1.5 79167 1a05A 358 9.57e+00 1cnzA c.77.1.1 35059 3cla 213 9.70e+00 3cla c.43.1.1 32610 1sdoA 203 9.91e+00 unknown_sccs -7558 1bhtA 176 9.98e+00 1bhtA g.10.1.1 44603 g.14.1.1 44663 1d0cA 444 1.01e+01 d.174.1.1 64769 1ihkA 174 1.07e+01 1bfg b.42.1.1 62384 1g60A 260 1.08e+01 c.66.1.11 70151 1g8kB 133 1.09e+01 1g8jB b.33.1.1 24435 1el4A 195 1.11e+01 1ej3A a.39.1.5 59453 1jf2A 195 1.14e+01 1ej3A a.39.1.5 62930 1bbpA 173 1.15e+01 1bbpA b.60.1.1 27147 1obdA 306 1.16e+01 d.143.1.1 86767 1qntA 176 1.17e+01 1sfe a.4.2.1 16074 c.55.7.1 33749 1n9eA 787 1.19e+01 b.30.2.1 -3529 d.17.2.1 -9278 d.17.2.1 -9279 1tocR 120 1.22e+01 1tocR g.8.1.2 44558 g.8.1.2 44559 1hk9A 74 1.29e+01 b.38.1.2 83541 1jfmA 174 1.30e+01 d.19.1.1 66640 1ep3B 262 1.34e+01 1ep2B b.43.4.2 25664 c.25.1.3 31554 1kk8B 139 1.42e+01 a.39.1.5 77430 1e3mA 800 1.52e+01 1ewqA a.113.1.1 19075 c.37.1.12 32389 c.55.6.1 33746 d.75.2.1 39747 1h65A 270 1.53e+01 c.37.1.8 65640 1q67A 231 1.54e+01 unknown_sccs -4373 1i8dA 213 1.55e+01 b.43.4.3 61953 b.43.4.3 61954 1kb9H 93 1.55e+01 f.23.13.1 77323 1kc6A 257 1.62e+01 c.52.1.19 68419 1bmqB 88 1.76e+01 1pauB 1fu1A 203 1.81e+01 1fu1B b.59.1.1 27076 h.1.11.1 45630 1zfjA 491 1.81e+01 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 1qv1A 195 1.83e+01 a.39.1.5 -830 1ezvG 93 1.89e+01 1ezvG f.23.13.1 59551 1i0rA 169 1.91e+01 1i0rA b.45.1.2 61489 1h6kZ 98 1.96e+01 d.58.7.1 60686 1gg3A 279 1.99e+01 1ef1A a.11.2.1 16372 b.55.1.5 27007 d.15.1.4 37615 1agi 125 2.03e+01 7rsa d.5.1.1 37303 1iybA 208 2.07e+01 d.124.1.1 -10977 1f6bA 198 2.08e+01 c.37.1.8 64986 1ek8A 185 2.11e+01 1ek8A d.67.3.1 59444 1ud9A 245 2.11e+01 3inkC 133 2.13e+01 3inkC a.26.1.2 16881 1i0sA 169 2.16e+01 1i0rA b.45.1.2 61491 1nw3A 416 2.18e+01 c.66.1.31 86288 1owxA 121 2.43e+01 d.58.7.1 87494 1lb6A 160 2.46e+01 b.8.1.1 73798 1oo2A 119 2.48e+01 b.3.4.1 -2925 1j0hA 588 2.49e+01 b.1.18.2 77027 b.71.1.1 77028 c.1.8.1 77029 1urnA 97 2.49e+01 1urnA d.58.7.1 39153 1qwtA 255 2.49e+01 unknown_sccs -3329 1s7zA 117 2.53e+01 unknown_sccs -344 1wdcB 156 2.63e+01 1wdcB a.39.1.5 17302 1iuhA 198 2.75e+01 d.61.1.2 83711 1h98A 78 2.81e+01 d.58.1.2 65743 1gt1A 159 2.81e+01 b.60.1.1 -4436 1b3tA 147 2.85e+01 1b3tA d.58.8.1 39228 1g6xA 58 2.86e+01 1bpi g.8.1.1 60320 1ia9A 280 2.96e+01 1ia9A d.144.1.5 62113 1vjlA 164 2.98e+01 unknown_sccs -11117 1vhiA 142 2.99e+01 1b3tA d.58.8.1 39230 1hn2A 159 3.02e+01 b.60.1.1 65890 1e2tA 284 3.12e+01 1e2tA d.3.1.5 37121 1hulA 108 3.25e+01 1hulA a.26.1.2 16865 1op4A 159 3.33e+01 b.1.6.1 -2794 1pytA 94 3.37e+01 1pytA d.58.3.1 39064 1i9zA 347 3.41e+01 1i9yA d.151.1.2 62102 1ne9A 335 3.50e+01 d.108.1.4 -10805 d.108.1.4 -10806 1e29A 135 3.58e+01 1e29A a.3.1.1 59161 1kxoA 184 3.67e+01 b.60.1.1 84475 1obpA 159 3.68e+01 1obpA b.60.1.1 27092 1qtnB 95 3.78e+01 1pauB 1wdcC 156 3.85e+01 1wdcC a.39.1.5 17317 1sjyA 159 3.85e+01 d.113.1.1 -10908 1ewiA 114 3.94e+01 1ewiA b.40.4.3 25302