# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1hn6A	110	2.46e-15		g.61.1.1	76721
1iqqA	200	6.30e-02		d.124.1.1	66274
1rypJ	204	3.25e-01		d.153.1.4	41878
1jb7B	260	1.75e+00	1otcB	b.40.4.3	62839
1tocR	120	4.05e+00	1tocR	g.8.1.2	44558
				g.8.1.2	44559
1jztA	246	4.90e+00		c.104.1.1	63319
2eng	210	6.71e+00	2eng	b.52.1.1	26895
1qtrA	317	8.44e+00	1qtrA	c.69.1.7	34660
1p4uA	153	8.53e+00		b.1.10.2	87780
1kthA	58	9.22e+00		g.8.1.1	68863
2knt	58	9.22e+00	1bpi	g.8.1.1	44537
1rypK	198	9.39e+00		d.153.1.4	41879
1ep3B	262	9.41e+00	1ep2B	b.43.4.2	25664
				c.25.1.3	31554
1nu5A	370	1.27e+01		c.1.11.2	-5565
				d.54.1.1	-9823
1seiA	130	1.51e+01	1seiA	d.140.1.1	41463
1lkfA	299	1.62e+01	1pvl	f.6.1.1	43821
1bkjA	240	1.63e+01	1bkjA	d.90.1.1	40243
1pvc3	238	1.97e+01	1aym3		
1bhtA	176	1.99e+01	1bhtA	g.10.1.1	44603
				g.14.1.1	44663
1l8fA	207	2.11e+01		b.52.1.1	84537
2hgf	97	2.14e+01	1bhtA	g.10.1.1	44607
1al3	324	2.49e+01	1al3	c.94.1.1	35835
1q0bA	367	2.50e+01		c.37.1.9	-7105
1m6yA	301	2.59e+01		a.60.13.1	78716
				c.66.1.23	78717
1vj0A	380	2.61e+01		b.35.1.2	-3697
				c.2.1.1	-5721
1fkmA	396	2.61e+01	1fkmA	a.69.2.1	18315
				a.69.2.1	18316
1d3yA	301	2.67e+01	1d3yA	e.12.1.1	43252
1gyfA	62	2.80e+01	1gyfA	d.76.1.1	39749
1dceA	567	2.80e+01	1dceA	a.118.6.1	19191
				b.7.4.1	23218
				c.10.2.2	30867
1qovH	260	3.03e+01	6prcH	b.41.1.1	25464
				f.23.10.1	43457
1a49A	530	3.16e+01	1a49A	b.58.1.1	27026
				c.1.12.1	29255
				c.49.1.1	33109
1cnzA	363	3.20e+01	1cnzA	c.77.1.1	35061
1smd	496	3.39e+01	1smd	b.71.1.1	27768
				c.1.8.1	28755
1mjhA	162	3.60e+01	1mjhA	c.26.2.4	31639
1r0vA	305	3.85e+01		c.52.2.1	-7572
				c.52.2.1	-7573
				d.75.1.1	-10344
1c5cL	214	3.88e+01	32c2A	b.1.1.1	20474
				b.1.1.2	21438
1a1x	108	3.95e+01	1a1x	b.63.1.1	27514
1el4A	195	3.98e+01	1ej3A	a.39.1.5	59453