# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hn6A 110 1.73e-19 g.61.1.1 76721 1tocR 120 3.92e-02 1tocR g.8.1.2 44558 g.8.1.2 44559 1jb7B 260 7.73e-02 1otcB b.40.4.3 62839 1seiA 130 3.62e-01 1seiA d.140.1.1 41463 1v3eA 431 4.74e-01 b.68.1.1 -4584 1is1A 185 7.23e-01 d.67.3.1 83704 1te5A 257 8.19e-01 1iqqA 200 9.63e-01 d.124.1.1 66274 1p65A 73 2.07e+00 unknown_sccs -10331 1h4rA 314 2.16e+00 a.11.2.1 65616 b.55.1.5 65617 d.15.1.4 65618 1mk0A 97 3.16e+00 d.226.1.1 79216 1m7xA 617 3.46e+00 b.1.18.2 78749 b.71.1.1 78750 c.1.8.1 78751 1ig8A 486 3.62e+00 2yhx c.55.1.3 64746 c.55.1.3 64747 1jyhA 157 4.31e+00 d.60.1.3 71956 1gyfA 62 4.83e+00 1gyfA d.76.1.1 39749 1bhtA 176 5.48e+00 1bhtA g.10.1.1 44603 g.14.1.1 44663 1bbpA 173 5.49e+00 1bbpA b.60.1.1 27147 1jenA 267 5.68e+00 1jenA 1ihkA 174 5.99e+00 1bfg b.42.1.1 62384 2hgf 97 6.24e+00 1bhtA g.10.1.1 44607 1g5aA 628 6.54e+00 b.71.1.1 65152 c.1.8.1 65153 1rzhM 307 6.63e+00 f.26.1.1 -12227 1bkjA 240 7.04e+00 1bkjA d.90.1.1 40243 1l1dA 152 8.69e+00 b.88.1.3 73452 1g8lA 411 8.88e+00 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1i8nA 126 9.08e+00 1i8nA g.10.1.2 61976 1a49A 530 9.33e+00 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1qlaA 656 1.01e+01 1qlaA a.7.3.1 16328 c.3.1.4 30427 d.168.1.1 42310 1moxC 50 1.01e+01 g.3.11.1 -12499 1v8fA 276 1.24e+01 c.26.1.4 -6618 1nxcA 478 1.30e+01 a.102.2.1 -1333 1lkfA 299 1.30e+01 1pvl f.6.1.1 43821 1jr8A 117 1.31e+01 a.24.15.1 67115 1hbq 183 1.33e+01 1aqb b.60.1.1 27078 1smd 496 1.43e+01 1smd b.71.1.1 27768 c.1.8.1 28755 1kt6A 183 1.43e+01 b.60.1.1 84466 1bolA 222 1.52e+01 1bolA d.124.1.1 41120 1b3tA 147 1.59e+01 1b3tA d.58.8.1 39228 1nm8A 616 1.59e+01 c.43.1.3 85872 c.43.1.3 85873 1vj0A 380 1.66e+01 b.35.1.2 -3697 c.2.1.1 -5721 1h65A 270 1.66e+01 c.37.1.8 65640 1n4qB 377 1.66e+01 a.102.4.3 -1424 1oj5A 132 1.67e+01 unknown_sccs -10848 1poc 134 1.67e+01 1poc a.133.1.1 19513 1b65A 375 1.67e+01 1b65A d.154.1.1 42020 2knt 58 1.69e+01 1bpi g.8.1.1 44537 1shdA 107 1.88e+01 1fmk d.93.1.1 40440 1r3eA 309 1.90e+01 b.122.1.1 -5118 unknown_sccs -10146 1l5xA 280 1.91e+01 c.106.1.1 77718 1ud9A 245 1.97e+01 1bqk 124 1.99e+01 1bqk b.6.1.1 22889 2pspA 106 2.01e+01 2pspA g.16.1.1 44730 g.16.1.1 44731 1eejA 216 2.14e+01 1eejA c.47.1.9 33057 d.17.3.1 38071 1cnzA 363 2.15e+01 1cnzA c.77.1.1 35061 1eluA 390 2.21e+01 1elqA c.67.1.3 34434 1qe3A 489 2.29e+01 2bce c.69.1.1 34630 1el4A 195 2.33e+01 1ej3A a.39.1.5 59453 1olzA 663 2.34e+01 b.1.1.4 -2678 unknown_sccs -4626 unknown_sccs -12590 1g6xA 58 2.34e+01 1bpi g.8.1.1 60320 1jf2A 195 2.36e+01 1ej3A a.39.1.5 62930 1iv8A 720 2.56e+01 b.71.1.1 76842 c.1.8.1 76843 1kthA 58 2.57e+01 g.8.1.1 68863 1mhnA 59 2.60e+01 b.34.9.1 84964 1dceA 567 2.71e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1m6eX 359 2.74e+01 unknown_sccs -8071 1kqfA 1015 2.83e+01 b.52.2.2 72871 c.81.1.1 72872 1trb 320 2.91e+01 1trb c.3.1.5 30529 c.3.1.5 30530 1v61A 132 2.95e+01 1rypJ 204 3.05e+01 d.153.1.4 41878 2pil 159 3.08e+01 2pil d.24.1.1 38376 1g71A 347 3.13e+01 1g71A unknown_sccs 43268 1e3dB 542 3.26e+01 1h2rL e.18.1.1 59189 5ptp 223 3.33e+01 5ptp b.47.1.2 25831 1l3aA 228 3.39e+01 d.18.1.2 73531 1czyA 168 3.40e+01 1d0aB b.8.1.1 23220 h.1.2.1 45427 1gp0A 143 3.42e+01 b.64.1.1 70300 1qdp 42 3.45e+01 1vtx g.3.6.2 44113 1shwA 138 3.50e+01 1efyA 350 3.59e+01 1a26 a.41.1.1 17413 d.166.1.2 42275 1v33A 366 3.62e+01 unknown_sccs -11384 1n9bA 265 3.69e+01 e.3.1.1 85463 1q15A 503 3.71e+01 c.26.2.1 -6625 d.153.1.1 -11400 1od8A 313 3.71e+01 c.1.8.3 86838 1hj9A 226 3.80e+01 b.47.1.2 65845 1b77A 228 3.83e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 1ab8A 220 3.91e+01 1azsA d.58.29.1 39414 1jb9A 316 3.92e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 1ewqA 765 3.94e+01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743 1dxy 333 3.95e+01 1dxy c.2.1.4 30094 c.23.12.1 31354