# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hn6A 110 6.39e-20 g.61.1.1 76721 1tocR 120 3.52e-01 1tocR g.8.1.2 44558 g.8.1.2 44559 1g5aA 628 3.61e-01 b.71.1.1 65152 c.1.8.1 65153 1e9rA 437 6.72e-01 c.37.1.11 64827 1b3tA 147 2.10e+00 1b3tA d.58.8.1 39228 1mb4A 370 2.95e+00 c.2.1.3 78908 d.81.1.1 78909 1kkeA 210 3.28e+00 b.21.1.2 68669 b.83.1.2 68670 1kgsA 225 3.73e+00 a.4.6.1 68596 c.23.1.1 68597 1e0wA 313 5.42e+00 1taxA c.1.8.3 59150 1eyoA 30 5.62e+00 g.3.6.1 44098 1od8A 313 5.62e+00 c.1.8.3 86838 1h9oA 112 7.47e+00 1qadA d.93.1.1 60837 1oz7A 131 7.71e+00 d.169.1.1 -11622 1f4qA 165 8.21e+00 1alvA a.39.1.8 17360 1fvuA 133 9.06e+00 1ixxB d.169.1.1 42345 1l5xA 280 9.13e+00 c.106.1.1 77718 1vhiA 142 9.27e+00 1b3tA d.58.8.1 39230 1iupA 282 9.42e+00 c.69.1.10 76815 1uruA 244 1.06e+01 unknown_sccs -13001 1iv3A 152 1.10e+01 d.79.5.1 76828 1dyr 206 1.24e+01 1aoeA c.71.1.1 34916 1jr8A 117 1.25e+01 a.24.15.1 67115 1poc 134 1.32e+01 1poc a.133.1.1 19513 1ep3B 262 1.34e+01 1ep2B b.43.4.2 25664 c.25.1.3 31554 1k94A 165 1.36e+01 a.39.1.8 68333 1oj6A 151 1.39e+01 a.1.1.2 -85 1oe9A 795 1.41e+01 b.34.3.1 -3581 c.37.1.9 -7103 1sn4A 64 1.51e+01 1aho g.3.7.1 44136 1c4xA 285 1.60e+01 1c4xA c.69.1.10 34684 1q1fA 151 1.67e+01 1c3cA 429 1.71e+01 1c3cA a.127.1.1 19425 1lm6A 215 1.82e+01 d.167.1.1 84628 1ede 310 2.39e+01 1b6g c.69.1.8 34662 3nul 130 2.45e+01 3nul d.110.1.1 40891 2ahjA 206 2.48e+01 2ahjA d.149.1.1 41772 1qv1A 195 2.55e+01 a.39.1.5 -830 1b6g 310 2.66e+01 1b6g c.69.1.8 34661 1qtnB 95 2.69e+01 1pauB 1bhtA 176 2.77e+01 1bhtA g.10.1.1 44603 g.14.1.1 44663 1nyhA 166 2.82e+01 h.1.23.1 86403 1f44A 324 2.88e+01 a.60.9.1 64982 d.163.1.1 64983 1iqqA 200 2.89e+01 d.124.1.1 66274 1shwA 138 3.06e+01 1afp 51 3.07e+01 1afp g.26.1.1 44947 1iq4A 179 3.17e+01 1iq4A d.77.1.1 62641 1ei9A 279 3.24e+01 1ei9A c.69.1.13 34713 1tidB 119 3.27e+01 1gs5A 258 3.29e+01 c.73.1.2 70395 2pspA 106 3.36e+01 2pspA g.16.1.1 44730 g.16.1.1 44731 2hgf 97 3.40e+01 1bhtA g.10.1.1 44607 1dxeA 256 3.65e+01 1dxeA c.1.12.5 29310 1c44A 123 3.79e+01 1qndA d.106.1.1 40795 1jf2A 195 3.79e+01 1ej3A a.39.1.5 62930 1vi0A 206 3.87e+01 a.4.1.9 -206 a.121.1.1 -1659 1bkf 107 3.90e+01 1fkj d.26.1.1 38382 1c4kA 730 3.94e+01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1nrlA 316 3.97e+01 a.123.1.1 -1668