# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1hn6A	110	1.44e-15		g.61.1.1	76721
1tocR	120	1.73e-01	1tocR	g.8.1.2	44558
				g.8.1.2	44559
1iqqA	200	2.77e-01		d.124.1.1	66274
1a4sA	503	2.68e+00	1bpwA	c.82.1.1	35361
1jb7B	260	2.94e+00	1otcB	b.40.4.3	62839
1smd	496	4.01e+00	1smd	b.71.1.1	27768
				c.1.8.1	28755
1seiA	130	5.10e+00	1seiA	d.140.1.1	41463
1m6eX	359	7.63e+00		unknown_sccs	-8071
1qlaA	656	9.09e+00	1qlaA	a.7.3.1	16328
				c.3.1.4	30427
				d.168.1.1	42310
1bqsA	209	1.07e+01	1bqsA	b.1.1.4	21704
				b.1.1.4	21705
1qtrA	317	1.11e+01	1qtrA	c.69.1.7	34660
1al3	324	1.32e+01	1al3	c.94.1.1	35835
1a49A	530	1.36e+01	1a49A	b.58.1.1	27026
				c.1.12.1	29255
				c.49.1.1	33109
1te5A	257	1.54e+01			
1iooA	196	1.62e+01		d.124.1.1	71250
1poc	134	1.68e+01	1poc	a.133.1.1	19513
1el4A	195	1.79e+01	1ej3A	a.39.1.5	59453
1jf2A	195	1.83e+01	1ej3A	a.39.1.5	62930
1v3eA	431	1.89e+01		b.68.1.1	-4584
1kthA	58	1.91e+01		g.8.1.1	68863
2knt	58	1.91e+01	1bpi	g.8.1.1	44537
1nu5A	370	2.24e+01		c.1.11.2	-5565
				d.54.1.1	-9823
1oj6A	151	2.50e+01		a.1.1.2	-85
1m6yA	301	2.64e+01		a.60.13.1	78716
				c.66.1.23	78717
1gsmA	210	2.64e+01		b.1.1.4	65535
				b.1.1.4	65536
1cnzA	363	2.75e+01	1cnzA	c.77.1.1	35061
1dceA	567	2.89e+01	1dceA	a.118.6.1	19191
				b.7.4.1	23218
				c.10.2.2	30867
1jr8A	117	3.00e+01		a.24.15.1	67115
1ej6B	1275	3.10e+01		i.7.1.1	45968
1p65A	73	3.49e+01		unknown_sccs	-10331
1o04A	500	3.61e+01		c.82.1.1	86508
1g5aA	628	3.62e+01		b.71.1.1	65152
				c.1.8.1	65153
1nt4A	391	3.63e+01		c.60.1.2	-7942
1gyfA	62	3.90e+01	1gyfA	d.76.1.1	39749
1r0vA	305	3.90e+01		c.52.2.1	-7572
				c.52.2.1	-7573
				d.75.1.1	-10344
1bolA	222	3.91e+01	1bolA	d.124.1.1	41120
1om1A	332	3.96e+01		d.144.1.7	-11318