# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hn6A 110 2.01e-20 g.61.1.1 76721 1tocR 120 1.44e-02 1tocR g.8.1.2 44558 g.8.1.2 44559 1jb7B 260 1.65e-02 1otcB b.40.4.3 62839 1smd 496 1.59e-01 1smd b.71.1.1 27768 c.1.8.1 28755 1iqqA 200 2.76e-01 d.124.1.1 66274 1jztA 246 8.52e-01 c.104.1.1 63319 1seiA 130 9.46e-01 1seiA d.140.1.1 41463 1bqsA 209 1.71e+00 1bqsA b.1.1.4 21704 b.1.1.4 21705 1qlaA 656 1.72e+00 1qlaA a.7.3.1 16328 c.3.1.4 30427 d.168.1.1 42310 1kthA 58 2.32e+00 g.8.1.1 68863 2knt 58 2.32e+00 1bpi g.8.1.1 44537 1bhtA 176 2.36e+00 1bhtA g.10.1.1 44603 g.14.1.1 44663 2eng 210 2.55e+00 2eng b.52.1.1 26895 1hx0A 496 2.93e+00 b.71.1.1 61346 c.1.8.1 61347 1r0vA 305 3.08e+00 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1czyA 168 3.11e+00 1d0aB b.8.1.1 23220 h.1.2.1 45427 1l8fA 207 3.16e+00 b.52.1.1 84537 1a49A 530 3.37e+00 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1poc 134 3.40e+00 1poc a.133.1.1 19513 1g5aA 628 3.42e+00 b.71.1.1 65152 c.1.8.1 65153 1al3 324 3.48e+00 1al3 c.94.1.1 35835 1gyfA 62 4.46e+00 1gyfA d.76.1.1 39749 1ep3B 262 4.50e+00 1ep2B b.43.4.2 25664 c.25.1.3 31554 1gsmA 210 5.55e+00 b.1.1.4 65535 b.1.1.4 65536 1v3eA 431 6.23e+00 b.68.1.1 -4584 1p65A 73 6.38e+00 unknown_sccs -10331 1jeyA 609 7.70e+00 1jeqA unknown_sccs -4426 unknown_sccs -7990 1brwA 433 7.96e+00 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1bu8A 452 8.28e+00 1gpl b.12.1.2 23647 c.69.1.19 34795 1is1A 185 9.10e+00 d.67.3.1 83704 1bkjA 240 1.01e+01 1bkjA d.90.1.1 40243 1te5A 257 1.02e+01 5ptp 223 1.08e+01 5ptp b.47.1.2 25831 4ptp 223 1.08e+01 1ir3A 306 1.14e+01 1fmk d.144.1.7 41702 2hgf 97 1.15e+01 1bhtA g.10.1.1 44607 1bolA 222 1.15e+01 1bolA d.124.1.1 41120 1sxjE 354 1.24e+01 1nm8A 616 1.24e+01 c.43.1.3 85872 c.43.1.3 85873 1a4sA 503 1.26e+01 1bpwA c.82.1.1 35361 3cla 213 1.30e+01 3cla c.43.1.1 32610 1v8fA 276 1.35e+01 c.26.1.4 -6618 1bh9A 45 1.37e+01 1bh9A a.22.1.3 16483 1ospL 214 1.37e+01 32c2A b.1.1.1 20116 b.1.1.2 21146 1mk0A 97 1.46e+01 d.226.1.1 79216 1mjhA 162 1.48e+01 1mjhA c.26.2.4 31639 1v8gA 329 1.51e+01 a.46.2.1 -953 c.27.1.1 -6644 1om1A 332 1.52e+01 d.144.1.7 -11318 1e3dB 542 1.53e+01 1h2rL e.18.1.1 59189 1dceA 567 1.69e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1g6xA 58 1.83e+01 1bpi g.8.1.1 60320 2ohxA 374 1.86e+01 2ohxA b.35.1.2 24669 c.2.1.1 29685 1viaA 175 1.87e+01 c.37.1.2 -7021 1r5tA 142 1.95e+01 1epfA 191 1.98e+01 2ncm b.1.1.4 21694 b.1.1.4 21695 1kf6D 119 2.00e+01 f.21.2.2 72400 1uf2C 421 2.14e+01 unknown_sccs -1522 b.19.1.1 -3155 1qntA 176 2.15e+01 1sfe a.4.2.1 16074 c.55.7.1 33749 1c5cL 214 2.16e+01 32c2A b.1.1.1 20474 b.1.1.2 21438 2trxA 108 2.17e+01 1thx c.47.1.1 32719 1j34A 129 2.33e+01 d.169.1.1 84048 1m2rA 327 2.39e+01 d.144.1.7 84760 1h65A 270 2.44e+01 c.37.1.8 65640 1mhnA 59 2.49e+01 b.34.9.1 84964 1k12A 158 2.50e+01 b.18.1.15 71978 1byb 495 2.54e+01 1byb c.1.8.1 28790 1gpjA 404 2.57e+01 a.151.1.1 65451 c.2.1.7 65452 d.58.39.1 65453 1jae 471 2.60e+01 1smd b.71.1.1 27773 c.1.8.1 28760 1h9oA 112 2.66e+01 1qadA d.93.1.1 60837 1rzhM 307 2.75e+01 f.26.1.1 -12227 2pil 159 2.85e+01 2pil d.24.1.1 38376 1hf2A 210 2.97e+01 1hf2A b.80.3.1 60992 c.102.1.1 60993 1lb6A 160 3.00e+01 b.8.1.1 73798 1eh6A 207 3.01e+01 1sfe a.4.2.1 16076 c.55.7.1 33751 2pspA 106 3.05e+01 2pspA g.16.1.1 44730 g.16.1.1 44731 1ej6B 1275 3.06e+01 i.7.1.1 45968 1j7lA 264 3.10e+01 d.144.1.6 62697 1v3hA 495 3.19e+01 1iooA 196 3.20e+01 d.124.1.1 71250 1iybA 208 3.20e+01 d.124.1.1 -10977 1rwiA 270 3.21e+01 unknown_sccs -4603 1qe3A 489 3.26e+01 2bce c.69.1.1 34630 1nxcA 478 3.27e+01 a.102.2.1 -1333 1ad3A 452 3.47e+01 1ad3A c.82.1.1 35335 1q6cA 495 3.89e+01 c.1.8.1 -5300 1cnzA 363 3.98e+01 1cnzA c.77.1.1 35061