# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1hn6A	110	1.02e-18		g.61.1.1	76721
1jeyB	565	5.45e-01	1jeqB	unknown_sccs	-4431
				unknown_sccs	-7995
1tlqA	189	2.08e+00			
1s6cA	183	2.56e+00		a.39.1.5	-858
1g5aA	628	2.65e+00		b.71.1.1	65152
				c.1.8.1	65153
1g8iA	190	3.07e+00	1rec	a.39.1.5	60363
1ep3B	262	4.22e+00	1ep2B	b.43.4.2	25664
				c.25.1.3	31554
1c3jA	351	7.63e+00	1c3jA	c.87.1.1	35459
1e9rA	437	7.75e+00		c.37.1.11	64827
1cunA	213	9.69e+00	1cunA	a.7.1.1	16313
				a.7.1.1	16314
1r4kA	169	1.13e+01		unknown_sccs	-3625
1cpt	412	1.31e+01	1cpt	a.104.1.1	18968
1okrA	123	1.39e+01		unknown_sccs	-235
2kinB	100	1.49e+01	3kinB		
1jv2A	957	1.72e+01		b.1.15.1	67334
				b.1.15.1	67335
				b.1.15.1	67336
				b.69.8.1	67337
1f4qA	165	1.82e+01	1alvA	a.39.1.8	17360
1ocsA	162	1.87e+01		d.189.1.1	-9929
1oz7A	131	2.19e+01		d.169.1.1	-11622
1d6jA	211	2.36e+01	1d6jA	c.37.1.4	31940
1rmd	116	2.44e+01	1rmd	g.37.1.1	45025
				g.44.1.1	45322
1r6rA	100	2.52e+01		unknown_sccs	-1071
1uruA	244	2.59e+01		unknown_sccs	-13001
1dxeA	256	2.68e+01	1dxeA	c.1.12.5	29310
1jae	471	2.82e+01	1smd	b.71.1.1	27773
				c.1.8.1	28760
1mzhA	225	2.85e+01		c.1.10.1	79698
1k94A	165	3.14e+01		a.39.1.8	68333
1h9oA	112	3.45e+01	1qadA	d.93.1.1	60837
2ilk	160	3.52e+01	2ilk	a.26.1.3	16885
1qtnB	95	3.65e+01	1pauB		
1eyoA	30	3.86e+01		g.3.6.1	44098
1iqqA	200	3.92e+01		d.124.1.1	66274
1ow1A	195	3.96e+01		unknown_sccs	-4422