PFRMAT RR
TARGET T0237
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The number of predictions is limited to .5*sequence_length
REMARK or to a limited set of high scoring pairs.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
PTVERSTRMSNPWKAFMEKYDIERTHSSGVRVDLGEDAEVENAKYRIPAG
RCPVFGKGIVIENSDVSFLRPVATGDQKLKDGGFAFPNANDHISPMTLAN
LKERYKDNVEMMKLNDIALCRTHAASFVMAGDQNSSYRHPAVYDEKEKTC
HMLYLSAQENMGPRYCSPDAQNRDAVFCFKPDKNESFENLVYLSKNVRND
WDKKCPRKNLGNAKFGLWVDGNCEEIPYVKEVEAEDLRECNRIVFGASAS
DQPTQYEEEMTDYQKIQQGFRQNNREMIKSAFLPVGAFNSDNFKSKGRGF
NWANFDSVKKKCYIFNTKPTCLINDKNFIATTALSHPQEVDLEFPCSIYK
DEIEREIKKQSRNMNLYSVDGERIVLPRIFISNDKESIKCPCEPERISNS
TCNFYVCNCVEKRAEIKENNQVVIKEEFRDYYENGEEKSNKQMLL
3 187 0 8 0.1836
4 187 0 8 0.24055
11 144 0 8 0.22185
11 196 0 8 0.1717
12 120 0 8 0.1938
12 154 0 8 0.1938
31 72 0 8 0.187
31 73 0 8 0.29325
31 77 0 8 0.20145
31 151 0 8 0.1887
31 193 0 8 0.2346
32 123 0 8 0.17
32 218 0 8 0.2907
37 73 0 8 0.255
37 77 0 8 0.34765
37 106 0 8 0.23035
38 73 0 8 0.187
38 107 0 8 0.25755
41 66 0 8 0.1887
58 73 0 8 0.17
58 220 0 8 0.3213
67 149 0 8 0.20315
72 214 0 8 0.1768
73 94 0 8 0.2363
73 106 0 8 0.33575
73 107 0 8 0.3553
73 151 0 8 0.22185
73 177 0 8 0.2261
73 193 0 8 0.3808
73 214 0 8 0.2907
73 219 0 8 0.27965
73 220 0 8 0.1921
74 106 0 8 0.24225
93 115 0 8 0.2907
102 149 0 8 0.33575
105 123 0 8 0.1887
107 214 0 8 0.5117
111 155 0 8 0.1768
117 127 0 8 0.28645
122 136 0 8 0.2125
122 145 0 8 0.17
122 187 0 8 0.1836
123 137 0 8 0.27285
127 139 0 8 0.2448
127 155 0 8 0.24055
136 145 0 8 0.21845
136 149 0 8 0.30005
137 218 0 8 0.1887
144 196 0 8 0.22015
151 193 0 8 0.20145
356 381 0 8 0.26605
357 381 0 8 0.29325
357 406 0 8 0.1955
END