PFRMAT RR
TARGET T0237
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
PTVERSTRMSNPWKAFMEKYDIERTHSSGVRVDLGEDAEVENAKYRIPAG
RCPVFGKGIVIENSDVSFLRPVATGDQKLKDGGFAFPNANDHISPMTLAN
LKERYKDNVEMMKLNDIALCRTHAASFVMAGDQNSSYRHPAVYDEKEKTC
HMLYLSAQENMGPRYCSPDAQNRDAVFCFKPDKNESFENLVYLSKNVRND
WDKKCPRKNLGNAKFGLWVDGNCEEIPYVKEVEAEDLRECNRIVFGASAS
DQPTQYEEEMTDYQKIQQGFRQNNREMIKSAFLPVGAFNSDNFKSKGRGF
NWANFDSVKKKCYIFNTKPTCLINDKNFIATTALSHPQEVDLEFPCSIYK
DEIEREIKKQSRNMNLYSVDGERIVLPRIFISNDKESIKCPCEPERISNS
TCNFYVCNCVEKRAEIKENNQVVIKEEFRDYYENGEEKSNKQMLL
107 214 0 8 0.5117
73 193 0 8 0.3808
73 107 0 8 0.3553
37 77 0 8 0.34765
102 149 0 8 0.33575
73 106 0 8 0.33575
58 220 0 8 0.3213
136 149 0 8 0.30005
357 381 0 8 0.29325
31 73 0 8 0.29325
93 115 0 8 0.2907
73 214 0 8 0.2907
32 218 0 8 0.2907
117 127 0 8 0.28645
73 219 0 8 0.27965
123 137 0 8 0.27285
356 381 0 8 0.26605
38 107 0 8 0.25755
37 73 0 8 0.255
127 139 0 8 0.2448
74 106 0 8 0.24225
127 155 0 8 0.24055
4 187 0 8 0.24055
73 94 0 8 0.2363
31 193 0 8 0.2346
37 106 0 8 0.23035
73 177 0 8 0.2261
73 151 0 8 0.22185
11 144 0 8 0.22185
144 196 0 8 0.22015
136 145 0 8 0.21845
122 136 0 8 0.2125
67 149 0 8 0.20315
151 193 0 8 0.20145
31 77 0 8 0.20145
357 406 0 8 0.1955
12 154 0 8 0.1938
12 120 0 8 0.1938
73 220 0 8 0.1921
137 218 0 8 0.1887
105 123 0 8 0.1887
41 66 0 8 0.1887
31 151 0 8 0.1887
38 73 0 8 0.187
31 72 0 8 0.187
122 187 0 8 0.1836
3 187 0 8 0.1836
END